Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3993 |
Symbol | |
ID | 8134980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4506120 |
End bp | 4506881 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644867300 |
Product | ABC transporter related |
Protein accession | YP_003019544 |
Protein GI | 253690354 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.564938 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAGTG TAAAGAATCT TTCTAAACGC TTTGGCGATC AGGTGGTGTT GGACAACATT AGTCTGAATA TCGCGAAGGG CGAAGTCGTG GCGATTATCG GCCCATCTGG TTCGGGTAAA TCCACGCTGC TGCGCTGTCT AAACCTGCTG GAAACACCAG AGTCGGGCAC GATTGAAATT GGCAACCAAA CGCTAGATAC GCGTCGTTAT TCCTCTAAAG AAGCCTATGC GCTGCGCCGT CAGACCGCGA TGGTGTTCCA GAGTTACAAC CTGTTTAAGA ACAAGACGGC GCTGGAGAAC GTGACGGAAG CGCTGATTGT CGTGAAAAAA ATGCCGAAGA AGCAGGCGGA TGAAATCGGT CTGGCGCTGC TGGAGCAGGT TGGTCTGCTG CCACAGGCGG CACAGTATCC GGTGACGCTA TCCGGCGGGC AGCAGCAGCG CGTGAGTATT GCACGTGCGC TGGCGGTCGA TCCGAAAGCC ATCTTGTTTG ATGAACCGAC CTCGGCGCTG GACCCGGAAA GGGTACATGA AGTGCTTCAG GTGATTCAGA AGCTGGCAAA AAACGACACC ACGATGGTGA TCGTGACCCA CGAAATGCAG TTTGCGAAAG AAGTGGCTGA CCGCGTGATC TTCATGGCGG ATGGTCACAT CGTTGAAGAA GGCCCGGCGG AGCAGGTCAT TAGCTTCTCG GACAACCCGC AAACCCAGCG TTTCCTGCGT CAGTTGACCA AGCTGCCTGA GCCGCTTGAG TACGATATTT AA
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Protein sequence | MISVKNLSKR FGDQVVLDNI SLNIAKGEVV AIIGPSGSGK STLLRCLNLL ETPESGTIEI GNQTLDTRRY SSKEAYALRR QTAMVFQSYN LFKNKTALEN VTEALIVVKK MPKKQADEIG LALLEQVGLL PQAAQYPVTL SGGQQQRVSI ARALAVDPKA ILFDEPTSAL DPERVHEVLQ VIQKLAKNDT TMVIVTHEMQ FAKEVADRVI FMADGHIVEE GPAEQVISFS DNPQTQRFLR QLTKLPEPLE YDI
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