Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3243 |
Symbol | |
ID | 8134215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3657037 |
End bp | 3658461 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644866540 |
Product | type VI secretion-associated protein, VC_A0119 family |
Protein accession | YP_003018799 |
Protein GI | 253689609 |
COG category | [S] Function unknown |
COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATGCAC ATCCCTGGTG TAAACGCCTG CAAACCTCGT TACCGGATGA GATGTTGCGC GCGGCGGTAT TGCCTGACGA TCCGCTCTGG GAAAAGGTCG AGACGGAGTT GGTCAAGCTG GGATCGCTGG CGCATAACCA GGTCGACCTT AACGTAGTCG CGGGTTATTG CCTGACCTTG CTGGAAAGCA AAACCAAAGA CATGCGGGTA TTGGTGCAGC TGCTGCGCTG CTTACAGCAC CCGGCCAAAG CAACACCGTT TTCTACCGCG CTGATGCTGC TGGACAGCTG GCTGGAGAGT TATTGGGCGA TCGCCTGGCC TGCCAGTCCG GTTCAGAAGC AGAAGCTGAT GATCCAGATT ATTCGGCGTT TTGAGAGCGT GCTTCCGCGT ATTGCAGAAA GCGGATCCAG CGCAGAGCTG GAGCAATTGC AGAAGTTAAC GGAGCAAGTG GCGACCCGCT GGAGCGAACT GGTCAGCGAC AAAGCCTCGC TGATGGATGA ACTGGTGCAG GGCATTAAGC GTGCCAGACA GCGACAGCAG GCGCAGGAAC AGGCGAATCA GACGGCGAAA CCGACGCCGA CGGCCAGCGG CGGTGGAGCA ACGGACGGGA GTGAAACCAG CGCCAGCGTG GCTTCGACGC CAGTCAGTTC GGTAGAAATT AATTCATCCG ACGAGCGCGG CTGGCGGCAA ACCCAGCTGA ACGTCGCGGC GCTGCTGGTT GAGCGCCATC CCGGCTCACC GATTGGCTAC CGTCTGCGCC GTCACGCTAT CTGGTCCGGT ATTGCCACAC CGCCGATGTC ATCCAAGGGA AATAAAACCC AACTGGCGCC CGTCTCGGCG GATCGCGTGG ATGAATACCA AAGTGCGCTG GCACAGGCTG ACTTGGCGCT GTGGGAACGG ATAGAACAAA GCCTAGTGCT GGCACCTTAC TGGTTTGATG GCCATATGCT GTCCGCTTCA GTGGCCTCGC GATTGGGACA TACCTCTGTC GCGACGGCAA TTGCCGAGGA GCTTTCGGCG TTTATTCAGC GTTTGCCTGA GCTGCGTGAA CTGGCGTTCA GCGATGGCGC ACCCTTTTTG ACCGGGAAGT GTAGCCAGTG GCTACAGTCC AGCCAGCCCG TTCGCGGTGG TGGCGGAGCA CGGCAGGACG ATCTGGCAAC GGAGGCGGCC GCTTGTCGGG ATGAGAAAGG AATTGGCGCG GCGATGCAGT TATTGGATGA ACGTATGCGC CGCCTGAAAG AACCGCGTGA CCGCTTTTAT GCCGAGTTGG TACTGGCAGA TTTACTCGCC GAAGAAGGGA TGAAGTCACT GGCAGCACAG CACTATCAGC ACATGTGGCA GGAAAGCCAA CAATTGGGCC TGATGCAATG GGAACCGGGA ATGGTCAGCC GCGTAGAGCG GTTGGCGTCA TCCCGCAAAA AATAA
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Protein sequence | MHAHPWCKRL QTSLPDEMLR AAVLPDDPLW EKVETELVKL GSLAHNQVDL NVVAGYCLTL LESKTKDMRV LVQLLRCLQH PAKATPFSTA LMLLDSWLES YWAIAWPASP VQKQKLMIQI IRRFESVLPR IAESGSSAEL EQLQKLTEQV ATRWSELVSD KASLMDELVQ GIKRARQRQQ AQEQANQTAK PTPTASGGGA TDGSETSASV ASTPVSSVEI NSSDERGWRQ TQLNVAALLV ERHPGSPIGY RLRRHAIWSG IATPPMSSKG NKTQLAPVSA DRVDEYQSAL AQADLALWER IEQSLVLAPY WFDGHMLSAS VASRLGHTSV ATAIAEELSA FIQRLPELRE LAFSDGAPFL TGKCSQWLQS SQPVRGGGGA RQDDLATEAA ACRDEKGIGA AMQLLDERMR RLKEPRDRFY AELVLADLLA EEGMKSLAAQ HYQHMWQESQ QLGLMQWEPG MVSRVERLAS SRKK
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