Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3129 |
Symbol | |
ID | 8134090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3542976 |
End bp | 3543839 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644866418 |
Product | spermidine synthase |
Protein accession | YP_003018688 |
Protein GI | 253689498 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCAGA AAGAAATTTG GTATGAAACC CTACATGCCA ACTTTGGCCA GTATTTTTCG GTTGATCGCG TGCTGTATCA CGAGAAGACC GATCATCAAG ATCTCATCAT CTTTGAAAAC GACGCATTAG GCCGTGTAAT GGCGCTTGAC GGCGTGGTGC AAACCACCGA GCGAGATGAG TTCATCTATC ACGAAATGCT CACCCACGTC CCTCTACTGT CACACGGCAA CGCCAAACGC GTACTGATTA TCGGTGGCGG CGATGGTGGT ATGCTGCGGG AAGTCAGCCG ACATCACGGC GTCGAACATA TCACGATGGT GGAGATCGAT GCAGGCGTAG TGGAATTCTG TCGCCAGTAT TTGCCCAATC ACAGCGCTGG TAGCTATGAC GACCCGCGTT TTAATCTGGT GATTGATGAC GGCGTGAATT TCGTCAGACA GTGCAGCGAC AAGTTTGACG TCATCATTTC CGATTGCACC GACCCCATCG GCCCCGGCGA AAGCCTGTTC ACCTCTGATT TCTATCAGGG TTGCGCCCGC TGCCTGAATG AAGGCGGAAT TTTCGTCGCG CAGAATGGCG TGTGTTTCCT ACAACAGGAT GAAGCCGTCG GCAGCCATAA AAAGCTCGGC CACTATTTCA AGGATGTCAG CTTTTATCAG GCGGCGATCC CAACGTACTA CGGCGGTATT ATGACGTTCG CCTGGGCCAG CAATAACCCG GCACTGCGCC AGATAGACGC CACCACACTG CGCCAACGTT TTGCGCAGTC AGGAATTACC TGTCGCTATT ACACGCCTGA TGTTCATATC GGCAGTTTTG CCCTGCCACA GTATCTGTTA AGCGCGCTAC AGAATGCGCA ATAA
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Protein sequence | MSQKEIWYET LHANFGQYFS VDRVLYHEKT DHQDLIIFEN DALGRVMALD GVVQTTERDE FIYHEMLTHV PLLSHGNAKR VLIIGGGDGG MLREVSRHHG VEHITMVEID AGVVEFCRQY LPNHSAGSYD DPRFNLVIDD GVNFVRQCSD KFDVIISDCT DPIGPGESLF TSDFYQGCAR CLNEGGIFVA QNGVCFLQQD EAVGSHKKLG HYFKDVSFYQ AAIPTYYGGI MTFAWASNNP ALRQIDATTL RQRFAQSGIT CRYYTPDVHI GSFALPQYLL SALQNAQ
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