Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2967 |
Symbol | |
ID | 8133922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3349019 |
End bp | 3352141 |
Gene Length | 3123 bp |
Protein Length | 1040 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644866250 |
Product | multidrug efflux system subunit MdtB |
Protein accession | YP_003018526 |
Protein GI | 253689336 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGGATA CCGTTCCAGC CAGCGGCGGC GGGCCGTCAC GCCTGTTTAT TCTGCGCCCC GTCGCAACAA CGCTGCTGAT GATCGCCATT CTACTGGCCG GTATCATCGG CTATCGGGCG CTGCCGGTTT CCGCACTGCC CGAGGTTGAT TACCCAACGA TTCAGGTCAT TACCCTGTAT CCCGGCGCCA GCCCCGACGT GGTGACGTCG GCGATTACCG CACCGCTGGA GCGGCAGTTC GGTCAGATGT CCGGGCTAAA ACAGATGTCG ACGCAGAGTG CCGGCGGCGC TTCCGTCATC ACGCTTCAGT TCCAGCTTGA ACTGTCGCTG GACGTCGCCG AACAGGATGT GCAGGCCGCC ATCAATGCGG CCAGCAACCT GCTACCGAAC GATCTGCCCT ATCCCCCGAC CTACAGCAAA GTAAACCCGG CCGATCCGCC GATTATGACG CTGGCCGTCA CCTCCAGCGC CATGTCGATG ACGCAGGTGC AGGACATGGT GGATAACCGC ATCGCACAGA AAATCTCGCA GGTAGCGGGC GTCGGTCTGG TGTCGTTAGC CGGTGGGCAG CGTCCTGCCG TGCGGGTAAG GCTGAACGCG CCAGCGCTGG CGGCATACGG CTTGACCAGT GAAACGATTC GCACTGCGAT TACCGCCGCC AACGTGAATT CCGCCAAGGG GAGTCTGGAT GGTCCGACGC GTTCGGTCAC GCTCTCCGCC AACGACCAGA TGAAGACCGT TGATGATTAC CGCAAACTGA TTGTCGCGTG GAAGAATGGC GCACCGGTGC GGCTTCAGGA TGTCGCCACT ATCGAGCAGG CCGCCGAGAA TATTCATCTT GGTGCCTGGG CGAATCGCCA GCAGGCGATC ATTATCAACG TTCAGCGCCA GCCGGGTGCC AACGTCATCA CAACCGCGGA CAGCATTAAC AAGATGCTGC CTGCGTTAAA AGCCAGCTTG CCGAACGCTG TCGAGGTCAC CACGCTGACT GACCGCACCA CCAGCATTCG CGCCTCGGTG AAAGACGTCC AGTTCGAGCT GCTGCTGGCT ATCGCGCTGG TCGTGATGGT GATTTACCTG TTCTTGCGTA ATGCCGTCGC TACGCTGATC CCCAGCATTG CCGTGCCGCT ATCGCTAGTT GGCACCTTTG CCGCCATGTA TTTCCTCGGT TTTTCCATCA ATAACCTGAC GCTGATGGCG CTCACCATCG CCACCGGTTT CGTGGTGGAT GATGCTATCG TGGTGATTGA AAACATTGCC CGCTATATCG AAAAAGGGGA AAAACCGCTT AACGCCGCGC TGAAGGGCGC AGGAGAAATC GGCTTCACCA TTATTTCTCT GACGTTCTCA CTCATCGCCG TGCTGATCCC GCTGCTGTTT ATGGGCGATA TCGTCGGACG GCTATTCCGC GAATTTGCCG TCACGCTGGC AGTATCTATC CTGATTTCCG CCGTCGTGTC GCTCACGCTA ACGCCGATGA TGTGCGCCCG CATGCTGAGT CATCAGTCTC TGCGGAAACA GAACCGTTTT ACCCGTGCCA GCGAACGTTT CTTCACTCGC CTGATTGATG CCTACGGCGT CTGGCTACGC AAGGTACTGA ACCATCCGTG GCTGACGCTT AGCGTCGCGC TCGGTACGCT GCTGCTGACG ATTCTGCTCT ATATCTGGAT CCCGAAAGGC TTCTTCCCGA TACAGGATAA CGGCATTATT CAGGGCACCG TGCAGGCGCC GCAAACCGTC TCGTTCAGCA ATATGGCCGA CCGCCAGCAG CGCGTTGCGT CCATCATCAT GAAAGATCCT GCGGTGGAAA GCGTCTCCTC GTTCATCGGC GTTGACGGCA CCAATGCCGC ATTGAATAGT GGCAGGCTGC AAATCAACCT GAAACCGCTC AGTGAACGCA GCGAACGCAT TCCAGAGATC ATCAGCCGCC TGCAACAGCA GACCGCACAG ATTCCCGGCA TCCAGCTGTA TCTGCAACCG GTGCAGGATC TCACTATCGA TACTCAGATT AGCCGCACGC AGTACCAGTT TACGCTACAG GCGATGTCGC TGGATGAACT CAGCGCCTGG GTGCCGAAAC TGATGACCGA ACTGAAAAAA CTGCCGCAGT TGGAGGATGT CAGCAGCGAC TGGCAAGACG GCGCCGCCGT CGCCTACGTC AACGTGAATC GCGACAGCGC CAGCCGTCTG GGCATCACGA TGTCGCAGGT CGACAGCGCG TTGTACAACG CTTTTGGTCA GCGTCTGGTG TCCACCATCT ATACGCAGGC CAGCCAGTAC CGCGTCGTGC TGGAGCACGA TACAACGAAC AACACCGGTC TGGACGCGCT GAACGACGTG CGTCTCATCA GCAGCGACGG CGGCACCATT CCGCTCAGCA GTATTGCCAC CATTGAAGAG CGTCAGGGGC CGTTGGCAAT CAACCATATT GACCAGTTCC CATCGACGAC GATCTCCTTC AACGTCGCCA ATGGTTATGC ACTAGGTGAA GCAGTGGATG CCATCACGCA GGCCGAACAG CAGATGAACC TGCCTGCGGA TATCACCACT CGTTTTCAGG GCAGTACGCT GGCGTTCCAG TCGGCGCTGA GCAGCACCGT ATGGCTTATC GTGGCGGCGA TTGTCGCAAT GTACATTGTG CTCGGCGTGC TGTACGAAAG CTTTATTCAC CCGATCACCA TCTTGTCCAC GCTGCCAACA GCGGGCGTCG GTGCGCTGTT GGCGCTGATG ATGGCGGGGA ATGAACTGGA TGTGATCGCT ATTATCGGAA TCATTTTGCT CATCGGGATC GTGAAGAAGA ACGCCATCAT GATGATCGAC TTCGCGCTGG CGGCGGAGCG AGAACAGGGC ATGAAACCGT ATGACGCGAT TTATCAGGCC TGCCTGCTGC GCTTCCGGCC GATTCTGATG ACGACCATGG CGGCGTTGCT AAGTGCGCTA CCGCTCATGC TGAGTACTGG CGTCGGCGCG GAACTGCGCC AGCCGCTGGG GATCTGTATG GTCGGCGGCC TGATCATGAG CCAGATTCTG ACGCTGTTTA CCACACCGGT GATTTACCTG CTGTTTGACC GTCTGGCGAC GCGTTTCCGT CGTGCGCCGC GTCAGGAGGA AGAAACCGAG TGA
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Protein sequence | MQDTVPASGG GPSRLFILRP VATTLLMIAI LLAGIIGYRA LPVSALPEVD YPTIQVITLY PGASPDVVTS AITAPLERQF GQMSGLKQMS TQSAGGASVI TLQFQLELSL DVAEQDVQAA INAASNLLPN DLPYPPTYSK VNPADPPIMT LAVTSSAMSM TQVQDMVDNR IAQKISQVAG VGLVSLAGGQ RPAVRVRLNA PALAAYGLTS ETIRTAITAA NVNSAKGSLD GPTRSVTLSA NDQMKTVDDY RKLIVAWKNG APVRLQDVAT IEQAAENIHL GAWANRQQAI IINVQRQPGA NVITTADSIN KMLPALKASL PNAVEVTTLT DRTTSIRASV KDVQFELLLA IALVVMVIYL FLRNAVATLI PSIAVPLSLV GTFAAMYFLG FSINNLTLMA LTIATGFVVD DAIVVIENIA RYIEKGEKPL NAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAVTLAVSI LISAVVSLTL TPMMCARMLS HQSLRKQNRF TRASERFFTR LIDAYGVWLR KVLNHPWLTL SVALGTLLLT ILLYIWIPKG FFPIQDNGII QGTVQAPQTV SFSNMADRQQ RVASIIMKDP AVESVSSFIG VDGTNAALNS GRLQINLKPL SERSERIPEI ISRLQQQTAQ IPGIQLYLQP VQDLTIDTQI SRTQYQFTLQ AMSLDELSAW VPKLMTELKK LPQLEDVSSD WQDGAAVAYV NVNRDSASRL GITMSQVDSA LYNAFGQRLV STIYTQASQY RVVLEHDTTN NTGLDALNDV RLISSDGGTI PLSSIATIEE RQGPLAINHI DQFPSTTISF NVANGYALGE AVDAITQAEQ QMNLPADITT RFQGSTLAFQ SALSSTVWLI VAAIVAMYIV LGVLYESFIH PITILSTLPT AGVGALLALM MAGNELDVIA IIGIILLIGI VKKNAIMMID FALAAEREQG MKPYDAIYQA CLLRFRPILM TTMAALLSAL PLMLSTGVGA ELRQPLGICM VGGLIMSQIL TLFTTPVIYL LFDRLATRFR RAPRQEEETE
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