Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2730 |
Symbol | |
ID | 8133683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3093120 |
End bp | 3097310 |
Gene Length | 4191 bp |
Protein Length | 1396 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644866018 |
Product | nitrite reductase (NAD(P)H), large subunit |
Protein accession | YP_003018296 |
Protein GI | 253689106 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAAC CGCATCTGAT TGTGATTGGT AATGGGATGG CAAGCGCACG ATTCGTCGAT GTGCTGCGTC AACTGGCCGC GACGCGCTAC CGCATCACCG TGATTGGTGA TGAACCGCGC GTCAGCTATA ACCGCATTCT GCTGTCGCCG GTATTGAGCG GCGAAAAAGC GTTTACGGAT ACGTTGTTAA CGCCCGCAGC TATCGACGAC GATGCGGCGC TGCCGGTGAA CACTCTGCTG GGTGAGCGGG TAACCCATAT CGATCGCCAG CAGCGTGAGG TGACAACGAC GCAACGGCAA CTGCATTACG ACCATTTGGT GCTGGCGACA GGTTCCACGC CTTTTATGCC GCCGATGCCC GGTATCGATC TGGCGGGGGT GTGTGGCTTC CGTACGCTGG ATGATGTCGA GCTGATGTTG ACGATGATCC GCCGGTCCGT TCCTGCGGTG GTGATTGGCG GGGGCTTGCT CGGGATTGAA GCGGCAGCGG CGCTGAAACT GCGCGGCGCT GACGTCACGC TGCTGCATCG CGTTCCGGTT TTGATGGAGC GGCAGTTGGA CGCTATGGCA AGCGACCTGC TGTGCGACAG CCTGCGCGCA CGCGGTATTG CCTGTGAGAC GGATGTGCAG GTTGTGGCGC TACACGGTGA TGAACACGGC GTCACGGCTG TTGCACTGGC GGATGGCCGC ACGATCCCCG CCGGTCTGGT GGTGGTGACC GCTGGCGTGA TCCCCGCCAG CCAGCTTGCA CGCGAGTGCG GATTACCCTG CAACCGCGGC ATCCTGGTGG ACGGTCAACT GCAAACTGCT GACCCCTATA TCAGCGCGAT CGGCGAATGC TGCGAGCTCA ACGGTGAAGT CGTCGGGCTG GTTGCCCCGT GTTTTGCCCA TGCCACGCTG GTGGCGCAGC GTCTGGCCGG ACATGCACCG CAAGATTATC AGCGTGAACA GGCGGCGACG CGGCTGAAAG TTACGGGCAT TGGCGTGGTC AGCGGCGGCG ATATTAACGT GGCGCCGGAT GATGAGGTGT ACACCCTTTT TGATCCGCAG ACGCAGCACT ATCGTCGTCT GCTCCTGCGC GACGGGCGGC TAAGCGGTGT TCTGCTGTAT GGCGACACCG ACGACAGCCA GCGTCTGCTG GCCGCAATGG ATCGCGCAAC CGCAGGCGAG ACGATTCCGC CTGCCTCGCT GCTTTTTGGC TTTTCTTCCC CCGATTCTGA CTCACAGCCT GAAGCTGTAA GGATTCCTGT CATGAGCAAA CCTATTTTAG TGGTCGTTGG CCACGGTATG GTCGGCCACT ATTTTCTTGA ACAACTGGTC GAGCGCGACT TGCATCAGCA CTACCACATC GTCGTCTTTG GCGAAGAACG CCATGAAGCC TATGACCGCG TGCATCTCTC CGAGTATTTC TCAGGGCGCA GCGCCGCCTC GCTGTCGCTG GTAAAAGAGG GCTTTTTTGC CGAGAGCGGT ATTGAGCTGC GCAGCGCCAG TGAGATCGTG GCTATCGATC GGGAACGTCA ATGCGTGTCT GACGCGCAGG GCAGAGAAAT CGCCTACGAC AAACTGGTGC TGGCGACGGG CTCTTATGCG TTTGTTCCGC CGATTCCCGG CAATACGCGC CCCGGCTGTC TGGTGTATCG CACGCTGGAC GATCTGGACG CGATTGCGGC ACAGGCGAAA AAGGCTAAAT CCGGCGTGGT AATCGGTGGC GGCTTGCTGG GGCTGGAAGC CGCCAATGCC CTGCGTCAAT TGGGGCTGGA CACTCATGTG GTGGAATTTG CGCCGCGCCT GATGGCGGTA CAGTTGGATG ACGGCGGTGC CACCATGCTG CGGCGCAAGA TTGAAGCGCT GGGCGTACAG ATTCATGTCA GCAAAGAAAC GCGAGAAATT ACCGACGGCG AGCAGGCGTT GCATCGTCTC TGCTTTGCTG ACGGCAGCGT ACTGGAAACC GATTTAGTGC TGTTTTCCGC CGGAATTCGT CCGCGTGACA AACTGGCGGA TAGCTGTGAT TTAGAGAAAG GACCACGCGG TGGCATTGTG ATTGATGACC ATTGCCAAAC CTCCGATGAC GCAATTTTTG CCATCGGCGA ATGTGCGCTA TGGAAAGGCC AGATTTTCGG ACTGGTGGCA CCGGGTTACC AGATGGCACG TAGCGTAGCC GATACCCTGG CGCAGCGGGA TACGCCATTT ACCGGCGCGG ATATGAGCAC CAAGCTGAAA CTGCTGGGCG TTGATGTGGC CTCAATTGGC GATGCGCACG GACGCACGGC GGGAAGCCAA AGTTATCAGT GGACGGACGG TCCGAACGAG ATCTACAAAA AAATCGTCGT GTCTGCCGAC GGCAAGCATT TACTGGGGGC GGTATTGATT GGCGATAGCA GCGATTACAG CACGTTGCTG CAAATGATGC TCAACGATAT GCCTTTGCCT GCACAGCCGG AAAGCCTGAT TTTACCTGCA CGTTCTGGCG ATGCGCCGAA AGGGCTGGGC GTGGCGGCGT TACCGGCCAG CGCACAGATC TGTTCTTGCC ATAATGTCAG CAAAGGCGAT ATCTCAGCGG CGGTAGCGGG TGGCTGCGGC GAGCTGGGCG CGCTAAAAAC CTGCACCAAA GCGGGAACGG GCTGCGGCGG CTGTGTGCCG CTGCTTAAAC AGGTGATGGA ATATGAACTG ACGCAGTTAG GCGTCGAAGT GAAAAAGGAC ATTTGCGAGC ACTTCGCCTA CTCACGTCAG GAGCTGTATC ACCTGATCCG CGTGCATGAA ATCCGTTCAT TCGACAGCCT TCTTGAGCGT TATGGCCACG GCTTGGGCTG TGAAGTGTGT AAGCCGCTGG TGGGGTCGAT GCTGGCGTCT TGCTGGAATG ATTATCTGCT GCAACCGCAG CACCTGCCGT TGCAGGATAC CAACGATCGT TTCTTCGCCA ACATCCAAAA AGACGGAACG TATTCCGTGG TGCCACGCGT TCCGGCAGGG GAAATTACGC CAGAAGGGTT AATCGCCATC GGTCAGGTGG CGCAGCGCTA CAACCTGTAT ACCAAGATCA CCGGCGGCCA GCGAGTGGAC TTATTCGGTG CACGATTGGA ACAACTACCG GCGATCTGGC GTGAGCTGAT CGACGCTGGA TTTGAAACCG GCCATGCCTA CGGTAAATCG CTGCGTACCG TGAAATCCTG CGTGGGTTCG ACCTGGTGCC GCTACGGCGT GCAGGATTCC ACCGGGCTGG CGATTCAACT GGAGCACCGT TACAAGGGGC TGCGTTCACC GCATAAGATC AAAATGGCGG TGTCTGGCTG TACCCGCGAA TGTGCAGAAG CGCAGAGCAA AGATATCGGC GTAATTGCCA CTGATAAAGG CTGGAACCTT TACGTGTGCG GCAACGGCGG TATGAAACCG CGCCATGCGG ATCTCTTCGC CAGCGATCTG GATACGGAAA CCCTGCTGCG CACCATCGAT CGGGTCTTGA TGTTTTATAT CCGCACCGGC GATCGCCTCC AGCGAACCAG CACCTGGATG GATAATCTGG AGGGCGGTAT CGACTATTTA CGTCAGGTGA TTCTGGAAGA CAGCCTGAAT ATCGGCGAAG AGCTGGATAA AGAGATGCAG CGTGTGGTGG AGGCCTACCA GTGCGAATGG CAAACCACGT TGGAAAGCCC GGAACGTCTG GCGCTGTTCC GCGGCTTCCT GAACAGCGAT AGCCCGGATG AAGCGGTGGT GATGGTGCCG GAGCGTGGAC AGATTCGTCC GGCACAGGAA CATGAGAAAG CGGTATCGCC AGAACCGGTT GCGCTGAAGC CCACGGCACA TGAAGCGGAA TGGGTGCAGG TGGCGACGCT GGGGGATATT CCGCGTCATG CGGGTATGGC GGCACGCCTC GGACAGCAGC AAATCGCGCT GTTCCATCTG CCGGGGAGCG AGCAGCAGGT GTACGCGCTG GAAAACCATG AACCGGGTAG CGGGGCGAAT GTGTTGTCCC GTGGGCTGAT CGGTGACGTG GCGGGTGAAC CCGTCGTGAT TTCTCCGCTG TACAAGAAAC GCTTCAAGCT GCGTGATGGC GTGAGCCCGG ATGACAGCGC GCTGTACGTA CGCGCCTGGC CAGTGCGCGT GAAAGATGAC GAGATTTGGG TATGCCGTCA GCCGCTGGCC GTACCGGAAA GCGTCGGTCT GGCAGATGCT GCTATGGCGA AAGCATCATG A
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Protein sequence | MMKPHLIVIG NGMASARFVD VLRQLAATRY RITVIGDEPR VSYNRILLSP VLSGEKAFTD TLLTPAAIDD DAALPVNTLL GERVTHIDRQ QREVTTTQRQ LHYDHLVLAT GSTPFMPPMP GIDLAGVCGF RTLDDVELML TMIRRSVPAV VIGGGLLGIE AAAALKLRGA DVTLLHRVPV LMERQLDAMA SDLLCDSLRA RGIACETDVQ VVALHGDEHG VTAVALADGR TIPAGLVVVT AGVIPASQLA RECGLPCNRG ILVDGQLQTA DPYISAIGEC CELNGEVVGL VAPCFAHATL VAQRLAGHAP QDYQREQAAT RLKVTGIGVV SGGDINVAPD DEVYTLFDPQ TQHYRRLLLR DGRLSGVLLY GDTDDSQRLL AAMDRATAGE TIPPASLLFG FSSPDSDSQP EAVRIPVMSK PILVVVGHGM VGHYFLEQLV ERDLHQHYHI VVFGEERHEA YDRVHLSEYF SGRSAASLSL VKEGFFAESG IELRSASEIV AIDRERQCVS DAQGREIAYD KLVLATGSYA FVPPIPGNTR PGCLVYRTLD DLDAIAAQAK KAKSGVVIGG GLLGLEAANA LRQLGLDTHV VEFAPRLMAV QLDDGGATML RRKIEALGVQ IHVSKETREI TDGEQALHRL CFADGSVLET DLVLFSAGIR PRDKLADSCD LEKGPRGGIV IDDHCQTSDD AIFAIGECAL WKGQIFGLVA PGYQMARSVA DTLAQRDTPF TGADMSTKLK LLGVDVASIG DAHGRTAGSQ SYQWTDGPNE IYKKIVVSAD GKHLLGAVLI GDSSDYSTLL QMMLNDMPLP AQPESLILPA RSGDAPKGLG VAALPASAQI CSCHNVSKGD ISAAVAGGCG ELGALKTCTK AGTGCGGCVP LLKQVMEYEL TQLGVEVKKD ICEHFAYSRQ ELYHLIRVHE IRSFDSLLER YGHGLGCEVC KPLVGSMLAS CWNDYLLQPQ HLPLQDTNDR FFANIQKDGT YSVVPRVPAG EITPEGLIAI GQVAQRYNLY TKITGGQRVD LFGARLEQLP AIWRELIDAG FETGHAYGKS LRTVKSCVGS TWCRYGVQDS TGLAIQLEHR YKGLRSPHKI KMAVSGCTRE CAEAQSKDIG VIATDKGWNL YVCGNGGMKP RHADLFASDL DTETLLRTID RVLMFYIRTG DRLQRTSTWM DNLEGGIDYL RQVILEDSLN IGEELDKEMQ RVVEAYQCEW QTTLESPERL ALFRGFLNSD SPDEAVVMVP ERGQIRPAQE HEKAVSPEPV ALKPTAHEAE WVQVATLGDI PRHAGMAARL GQQQIALFHL PGSEQQVYAL ENHEPGSGAN VLSRGLIGDV AGEPVVISPL YKKRFKLRDG VSPDDSALYV RAWPVRVKDD EIWVCRQPLA VPESVGLADA AMAKAS
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