Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2678 |
Symbol | |
ID | 8133631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3037425 |
End bp | 3038534 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644865966 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003018244 |
Protein GI | 253689054 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTCGGC TCAACTCTGC CACTATTGCT GTTTGCCTGT TGCCTCTCGC CCTAGTGGCG TGCGGTGATG CTTCTGACGT CGACGATCCT CGCAATCAGC CCCCGCTGGT GAGAGCGGCT ACCGTGGCGA GCGCCGCTGA TGCCTCGCGC GCATTTACTG GTGTGGTTGT CGCACGAATC CAAAGCGATC TGGGTTTTCG GGTACAAGGC AAAATCCTTG AACGTTTGGT GGACACCGGG CAGACCGTGA AACGCGGTCA GCCTTTGATG CGCTTAGACC CTATCGATCT CAGCCTGCAG GCACAAGCCC AGCAGCAGGC TGTTACCGCG GCTCGCGCCC GCGCCAGACA GGCGACCGAT GATGAAACTC GCTATCGTGG TCTGGTTGCA GCAGGTGCGG TATCCGCTTC AGCCTACGAT CAGATCAAGT CCGCTGCCGA GACGGCGAAA GCGGAGCTGA GTGCCGCGCA GGCTCAGGCC GATGTAGCGA AAAACGCGAC AGGCTATGCC GTGCTGCTGG CCGATGCTGA CGGTGTGGTC ATGGATACGC TGGCAGAACC CGGTCAAGTG GTGAGTGCAG GGCAAGCTGT CGTCAGATTG GCTCGGGCAG GGCAACGCGA GGCCATCGTG CAACTGCCTG AAACGCTACG GCCAGCGGTT GGGAGCGAAG CGCAGGCAAC CCGCTATGGC ACCGAACAAC AGCGTGTTTC CGCGAAACTG CGGGTGCTAT CCGATGCGGC TGATCCGCTG ACGCGTACCT TTGAAGCGAG GTATGTGCTT GACGGCGCGC TGGCGAGTGC CCCACTCGGC TCCACCGTTA CGCTCCATAT TGAGAAAGAG GATACATCCC GCCAGATGCT GCAGGTGCCG CTGGCGGCAA TCTATGATTC GGGGAAAGGG CCGGGTGTCT GGCGTATTTC CGGTGACCCA GCCAAAGTAT CATGGCAACC CGTTGAGATG TCTGGCCTTA GCGACGACAG GGCAAGGGTG GCCGGAAACC TTAAGCCGGG GGAACAGGTC GTCGCTTTGG GCGCACACTT GCTGCATGAC GGCGAAGCGG TTCGAGTGAT TGAACCACGC GGCGCCAGCG TTGCCGGGAG TCAGCCATGA
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Protein sequence | MLRLNSATIA VCLLPLALVA CGDASDVDDP RNQPPLVRAA TVASAADASR AFTGVVVARI QSDLGFRVQG KILERLVDTG QTVKRGQPLM RLDPIDLSLQ AQAQQQAVTA ARARARQATD DETRYRGLVA AGAVSASAYD QIKSAAETAK AELSAAQAQA DVAKNATGYA VLLADADGVV MDTLAEPGQV VSAGQAVVRL ARAGQREAIV QLPETLRPAV GSEAQATRYG TEQQRVSAKL RVLSDAADPL TRTFEARYVL DGALASAPLG STVTLHIEKE DTSRQMLQVP LAAIYDSGKG PGVWRISGDP AKVSWQPVEM SGLSDDRARV AGNLKPGEQV VALGAHLLHD GEAVRVIEPR GASVAGSQP
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