Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2493 |
Symbol | |
ID | 8133439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2860048 |
End bp | 2861502 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644865775 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_003018060 |
Protein GI | 253688870 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.15789 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACTCAA ATTATCGCGA GTCGGCATTG CCTGCGCCAG CCGTCAACAC CCCGCCGTGG CTTGGCCTCT CTGTGCTGCT GATAGCCGGT TTTGTCACGA TCTTCGACCT CTTCGTGGTC AATGTCGCTA TTCCCAGCAT GCAGGTCGAT CTGGGTGCTA GCTTCGCGCA AATCGGTTTC ATCGTAGCGG GTTATGAACT GGCTTTCGGC GTACTGCTGA TTACGGGTGG GCGGCTGGGG GATGTATTTG GTCGACGCCG CCTGTTTGTG GTGGGCATGG CCGGGTTTAC GCTCGCCTCT GCGCTGTGTG GTTTAGCGCC CAGTGCGGGG TTTCTGATCG GTGCCCGCAT CTTACAGGGA CTGGCGGCCG CTTTACTGTT TCCACAGGTT TATGCCTCTA TCCGCGTCAA TTTCGACGGT GATGATAGCC GCCGTGCCTT CGGCCTGCTG GGCATGACGC TAGGGCTCGC CGCTATCGCG GGTCAGATAC TGGGGGGATG GCTGGTGCAT GCCAATCTGT TCGGGTTGGG CTGGCGCAGT ATCTTTCTTA TCAATGTACC GATTGGCCTG CTTGCTATCG CCGCAGCACG ATTTATCCCT GAGTCCCGGA CGCCGCAGCG CCCTTCGCTG GACTGGATGG GCGTGGCGTT GGTCAGCGTT GGGCTGACGC TGCTGCTGGT GCCGCTGATT GAAGGGCCGG GACAAGGGTG GCCAGAATGG AGCCTGTGGA TGTTGGCCAC AGCAACGCTC TTGTTAGCGA TGTTTTACCG TCAGCAGGAA CGTCGACAGC GAGCGGGGCA TCTTCCGCTG GTGGATATGC GTCTGCTCGT ACAGCACCGT TTCCTGCTGG GTGTGTTGCT GGTGCTGCTG GTGTATTCCA CATCCAGCTC ATTTTTCCTG TGTTTTGCTT TGCTGGTGCA AACAGGGCTG GGGCTTGATC CTTTCCTTGC CGGAAGTATT TTCGCGCCGT GCAGCGTGGG TTTCGTTCTG GCATCGCTGG CAGCACCTCA TCTGGTTGCT CGCTGGGGTA CGGTTGCTAT CGTCGTGGGG GCGCTGGTTT ATGCTGTCTC GATCGGCCTG TTGATTATGC AGGTGCAGCT AGCGGGGGCC GATCTGGTGG CCGTTCGGCT GATCCCTGTG TTGGTGGTGG TCGGGGCAGG TCAGGGCTTT ATCATGACGC CGCTGTTAAA TCTGGTCTTG GGATTTGTGG ATGAGGCTCA GGCGGGTATG GCATCGGGCG TGATCTCGAC GGTTCAGCAG GTTGGGGCGG CGTTGGGTGT GGCCGTGGTG GGCATCCTGT TTGGTACTGC ACTGGCGACA GGCGATGACG CAGTTGCACA AGCGGGTCAA TACGTTTCAG CCTTTGTGGC GGGAATTCTC TACAACCTGA TTGCTGCGCT GCTGGTCTGC ATCCTGTTGC TGATGCTGGT GAGAACGCAG CGGTCATTCG GTTGA
|
Protein sequence | MNSNYRESAL PAPAVNTPPW LGLSVLLIAG FVTIFDLFVV NVAIPSMQVD LGASFAQIGF IVAGYELAFG VLLITGGRLG DVFGRRRLFV VGMAGFTLAS ALCGLAPSAG FLIGARILQG LAAALLFPQV YASIRVNFDG DDSRRAFGLL GMTLGLAAIA GQILGGWLVH ANLFGLGWRS IFLINVPIGL LAIAAARFIP ESRTPQRPSL DWMGVALVSV GLTLLLVPLI EGPGQGWPEW SLWMLATATL LLAMFYRQQE RRQRAGHLPL VDMRLLVQHR FLLGVLLVLL VYSTSSSFFL CFALLVQTGL GLDPFLAGSI FAPCSVGFVL ASLAAPHLVA RWGTVAIVVG ALVYAVSIGL LIMQVQLAGA DLVAVRLIPV LVVVGAGQGF IMTPLLNLVL GFVDEAQAGM ASGVISTVQQ VGAALGVAVV GILFGTALAT GDDAVAQAGQ YVSAFVAGIL YNLIAALLVC ILLLMLVRTQ RSFG
|
| |