| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2393 |
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| Symbol | |
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| ID | 8133338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2751472 |
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| End bp | 2755077 |
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| Gene Length | 3606 bp |
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| Protein Length | 1201 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644865674 |
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| Product | urea carboxylase |
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| Protein accession | YP_003017960 |
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| Protein GI | 253688770 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGACA AACTTCTGAT TGCCAACCGT GGCGCGATTG CGTGCCGTAT TCTGCGCTCG
CTGCGCGAGA TGAACGTCCG TGGCGTCGCG GTCTATTCCG ATGCCGATAT CAGTAGCCTG
CATATTCAGG ACGCCGATGA AGCTATAAGC CTGGGCGAGG GTGCGGCAGC GCACACCTAT
CTGGATGTAG AAAAAATTCT CTCTGCGGCT CGGCATAGCG GCGCGCAGGC CATTCATCCC
GGCTATGGTT TTCTGTCCGA GAATGCGGCG TTTGCCGAAG CCTGCGAAGC GGCGCAGGTC
GCCTTTGTCG GGCCGACGCC ACAGCAACTG CGGGTATTCG GCTTAAAGCA TACGGCGCGC
GCGCTGGCGA AAAAACACAA CGTGCCGCTG CTGGAAGGCA CCGAGCTGCT GGAAAATATT
GATGCGGCCC TCGGTGCGGC GGTAGCAATC GGCTATCCGG TCATGCTTAA AAGCACGGCG
GGCGGCGGCG GGATCGGGAT GCGCGTCTGC TATAGCGCGA CGGAGTTGTC CGACGCGTTT
GAAACGGTAA AACGTCTTGG GCAGAACAAT TTCAGCGATG CAGGCGTATT CATCGAAAAG
TATATCGAGT GCGCCCGGCA TCTGGAGGTA CAGATTTTTG GCGATGGTCA GGGCGACGTG
CTGGCGTTGG GTGCTCGGGA TTGTTCGGTA CAGCGCCGTA ACCAGAAAGT GATTGAAGAA
ACCCCCGCGC CCAACTTACC GGACGGGGTC GCCGATGCGC TGTGCGCGGC GGCAATCAGT
CTGGCGCAGG CGGTGAATTA CCGCAGTGCC GGAACGGTGG AATTCGTTTA TGACAGCGCG
ACGGACCGTT TTTACTTTCT TGAAGTGAAT ACGCGTTTGC AAGTGGAACA CGGCGTCACG
GAACAGGTCT GGGGCGTGGA TCTGGTGCGC TGGATGATCG AACTGGCTGC GGGGGATTTA
CCGCCGCTGC GCGAATTGGC TGTTGGACTG AATCCTCAGG GGCATGCGAT TCAGGCGCGT
CTGTACGCGG AAGATCCGGG CAAGCAGTTC CAGCCGTCGC CGGGGTTACT GACGGAAGTC
GCGTTTCCTG TCGCGGAGGG GCATCGCCTG CGCATCGATA CATGGGTGAC GGCCGGATGC
GAGATCCCGC CGTTTTTCGA CCCGATGCTG GCTAAGATTA TCGCCTATGA GCCTACCCGC
GAGCAGGCGA TGGCTGGGCT GGATCGGGCG CTGGCGGATA CGCGACTCTA CGGCGTGGAA
CACAACCGTG ACTATCTGCG TCAGATTCTG GCGGCAGAGC CATTTGCCTG CGGCCAACCG
TGGACACGTT GTCTGGATGC GCTGGTCTAT CAGGCGACAA CCTGCGAAGT GGTGAGCGCG
GGTACGCAGA CCACCGTACA GGACTATCCC GGACGTCTCG GGTACTGGGC GGTCGGCGTG
CCGCCATCGG GGCCAATGGA CGATCGCGCG CTGCGTTTAG GCAACCGTCT GGTAGGGAAT
CCGGCGGGCA CGGCCGCGCT GGAGATCACG ATGAACGGGC CGACGTTGCG TTTTAATACG
GATGCGGTGG CGGCGGTCAC CGGTGCGGCT ATCGCTATCG AATTAGACGG CAAACCTGTC
CTGATGGATA GCGTCTTTGC GATACCGGCG GGCGCCACGC TGCGCTTAGG TGCGGCGAAT
GCGCAGGGAG TCCGCAGCTA TCTTTGCCTG CGCGGTGGCC TCGACGTGCC GGATTATCTC
GGCAGTAAAA GCACCTTCAC ACTGGGGCAA TTTGGTGGTC ACGCGGGTAG AGCGCTACGG
GCGGGTGATG TATTGCACCT CGCGCCGCTG GTTGACCGAC GTATCGGCGA CAGCCTGCCG
GACGCGTTGC GCACCACGTT GTCTACCGTA CGTGAACTAC GCGTGATTTA TGGCCCGCAT
GCAGCACCGG ATTATTTCAC GCCTGCCTAT ATGGACACGT TTCTCACCAC CGAATGGGAA
GTGCATTTTA ACTCCAGCCG CACGGGCGTG CGCCTGATTG GTCCGAAACC GGAGTGGGTG
CGCGATAGCG GCGGTGAGGC GGGGCTGCAC CCGTCGAATA TTCACGATAA CCCTTATGCT
ATCGGCGCGG TGGATTTCAC TGGCGATATG CCGGTGATTC TGGGGCCGGA TGGTCCGAGT
TTGGGAGGCT TCGTTTGCCC GGTGACGGTG ATTGAGGCCG ATCTGTGGGC GCTGGGGCAG
CTCAACGCCG GTGACCGCGT ACGCTTTATT CCTGTCGATC TCCCCACGGC GCGCGCGCTG
GCGCTGGCAC GTCAGGCGGA GGTGGAGCAG CTTGCTCCGA TTGCGATCGA CTGGTCGCCT
GCCGCGCTGA TTTCTCCGGT GGTGTTGGAT ATCGGTGACG CGGATAAGTG GCTCGTTGCA
CGACTGTCCG GCGATACCCA TTTACTGCTG GAAGTCGGGG CGGCGGAACT GGATGTCGCG
CTGCGTTTCC GCGTCCATGC ACTGATGTTG GCGCTGGAGC AACTGACGCT CGATGGCATC
GTTGACGTGA CGCCGGGTAT CCGCTCATTA CAGGTGCACT ATCGTCCTGA AGCACTGTCG
TTGCCGCATC TGTTGGACGT GCTGTCCATA CTATGGCAGG AGGTTTGCAC CCAGCAGAAT
CTGACCGTGC CGTCGCGGGT GGTTTATCTG CCGCTGTCCT GGGACGATCC CGCTTGCCAA
CTGGCGATCC AAAAATACAT GACCACGGTA CGCAGCGATG CGCCCTGGTG CCCGAGCAAT
CTTGAATTTA TCCGGCGTAT TAACGAGCTG GATAATCTCG ATGAGGTTTA CCGCACGGTT
TTTGACGCCA GCTATCTGGT GATGGGGCTG GGTGATGTTT ATCTCGGTGC ACCGGTGGCA
ACGCCGCTGG ATCCGCGCCA TCGGTTAGTC ACTACCAAAT ATAATCCGGC GCGCACCTGG
ACGGCGGAAA ACTCGGTGGG CATTGGTGGT GCGTACCTGT GCGTTTACGG CATGGAAGGG
CCGGGAGGCT ACCAGTTTGT CGGACGCACG CTGCAAATGT GGGATCGCTA TCGCGGCGTT
GACGCTTTTG ACGGTAAACC GTGGCTGCTA CGCTTCTTTG ACCAAATTCG CTTCTATCCG
GTGTCGGCCG ACGAATTGTT ATCTATCCGA CGGGATTTCC CGCTGGGGCG CTATCCGTTG
CGGATCGAGC AAAGCGAGCT GGCGTTAAGC GCCTATCAGG ATTTTCTGTC ACGGGAAGCG
GAGGGTATCG AGGCATTCCG CGTGCGTCAG CGGGCTGCAT TTGAGGCGGA GCGCGAACGT
TGGCGTATTG CCGGTCAATC GGTGACGGAT AGTGGCGACA TGGTGATAGA GGAGGCGGAC
GACGCGCCGA TCCTGCCGGG ACAGGTTGGC GTAGAAAGCC CGATTTCCGG CAATCTGTGG
CAGGTGACGA CGGAAATCGG CAAGACGGTG GCCGAGGGAG AAACGCTGAT GATTCTCGAA
TCGATGAAAA TGGAAATTCC GATTGTATCG CCGCAGCGCG GCATGGTGCG GGATATCCGC
TGTCAACCCG GTGCATCCGT TCGCGCGGGG CAGTGCGTGG TGGTGATCGA ACCGCTAACG
GAATAA
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| Protein sequence | MFDKLLIANR GAIACRILRS LREMNVRGVA VYSDADISSL HIQDADEAIS LGEGAAAHTY
LDVEKILSAA RHSGAQAIHP GYGFLSENAA FAEACEAAQV AFVGPTPQQL RVFGLKHTAR
ALAKKHNVPL LEGTELLENI DAALGAAVAI GYPVMLKSTA GGGGIGMRVC YSATELSDAF
ETVKRLGQNN FSDAGVFIEK YIECARHLEV QIFGDGQGDV LALGARDCSV QRRNQKVIEE
TPAPNLPDGV ADALCAAAIS LAQAVNYRSA GTVEFVYDSA TDRFYFLEVN TRLQVEHGVT
EQVWGVDLVR WMIELAAGDL PPLRELAVGL NPQGHAIQAR LYAEDPGKQF QPSPGLLTEV
AFPVAEGHRL RIDTWVTAGC EIPPFFDPML AKIIAYEPTR EQAMAGLDRA LADTRLYGVE
HNRDYLRQIL AAEPFACGQP WTRCLDALVY QATTCEVVSA GTQTTVQDYP GRLGYWAVGV
PPSGPMDDRA LRLGNRLVGN PAGTAALEIT MNGPTLRFNT DAVAAVTGAA IAIELDGKPV
LMDSVFAIPA GATLRLGAAN AQGVRSYLCL RGGLDVPDYL GSKSTFTLGQ FGGHAGRALR
AGDVLHLAPL VDRRIGDSLP DALRTTLSTV RELRVIYGPH AAPDYFTPAY MDTFLTTEWE
VHFNSSRTGV RLIGPKPEWV RDSGGEAGLH PSNIHDNPYA IGAVDFTGDM PVILGPDGPS
LGGFVCPVTV IEADLWALGQ LNAGDRVRFI PVDLPTARAL ALARQAEVEQ LAPIAIDWSP
AALISPVVLD IGDADKWLVA RLSGDTHLLL EVGAAELDVA LRFRVHALML ALEQLTLDGI
VDVTPGIRSL QVHYRPEALS LPHLLDVLSI LWQEVCTQQN LTVPSRVVYL PLSWDDPACQ
LAIQKYMTTV RSDAPWCPSN LEFIRRINEL DNLDEVYRTV FDASYLVMGL GDVYLGAPVA
TPLDPRHRLV TTKYNPARTW TAENSVGIGG AYLCVYGMEG PGGYQFVGRT LQMWDRYRGV
DAFDGKPWLL RFFDQIRFYP VSADELLSIR RDFPLGRYPL RIEQSELALS AYQDFLSREA
EGIEAFRVRQ RAAFEAERER WRIAGQSVTD SGDMVIEEAD DAPILPGQVG VESPISGNLW
QVTTEIGKTV AEGETLMILE SMKMEIPIVS PQRGMVRDIR CQPGASVRAG QCVVVIEPLT
E
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