| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2143 |
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| Symbol | |
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| ID | 8133087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2450088 |
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| End bp | 2452040 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644865431 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_003017718 |
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| Protein GI | 253688528 |
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| COG category | [N] Cell motility |
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| COG ID | [COG5571] Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAGA AAGTCGCAGT TGCGGTAGGG ATGGCGTGTT TATCTGTACC TGCATGGGCT
TATGATTACG GTGATTATGC GCGCGAGACC GTAGATACGC TCATTAATGA TTATCCGGGG
CGCTATCGCG GTACGGCAAA TTTTGCCGGT GCGGCGGACT GGATGACGCA GCGGATGGCG
CCCGGTTATA CCACTGTCAG GCAGGATTTC TCCTGGACGG CAGGCGGTAC GACGCGTTCG
TCACAGAATG TGCTGGCCTC TAATGTCGGG CTGAGCAGTG AATATATTAT CACCGGCGCG
CACTTTGATA CCTTCTTCGG GCGGCCGACG CTGCAAGGAC TGGATGACAA CGCATCCGGT
GCATCGATCC TGACAGAAGT GGCGCGTAAT TTTAGCGGTA TTCAGACGGA GAAAACGCTG
GTCTTTGCGG CCTTCGGGGC AGAAGAAGAG GGGTTACGCG GTTCGCGTGC AATGGTTAAC
GATCTGATTG CGCAAGGAAC GGCTGGCGGC CTTACGGCCA TGATTAACAT GGACAGTATG
ATTACCGGCG ACAAACTCTA CGCGCATGCT GGCAATAACA GCGTAGCGAA TCCTGCGCTG
GCAAGCCTGC GTGAACAGAC GTTGCGTATC GCGAATGAAC TGGGCATCGA ACTGTTTACC
AACCCAGGGT TGAATGCGAG TTATCCGGCA GGAACTGGCT GTTGCAGTGA CGGCGATAGC
TTCAACGCCG CGTTTGATAT TCCCGTACTC TATATGGAGG CCACTAACTG GGATATCGGC
GATCAGGACG GCTATGAGCA AACCACGAAC CCTGCGGTAC CGGGGGGCGC GACATGGCAT
GACCCTACGG TTGATAACGA AGCCTTTCTG ACCAGCGTGC TGGGTCAGGA ACGCATTGAC
CAGCGCCTGC GCGACGTTTC ACGGTTGGTG ACACGACTGC TACTGGAAAT TTCCAATACC
GATTTGCTGC ATTCGGCCTA TTCCGCCGCT GCGATGCAAC AGGCAATGGA GGAGAGCCTG
AAGCGTCAGC GCCAATCATT GAGTGATTTG CATAATCAGC GCTGGTTACT GCTGCAAAAT
ACCACTCGTA GTGCAGGTAC GCTGGATACG GCAGTCGGGA TTGAAGGCGA TGTGACTCCG
TCAAATGGCT TTGACCGTGC ACCGCAGCAG CGTTCTCGTC AGGCGATGGC TTATGCGCTG
GTCGATTATC AATTAAGTGA CGGTGTCACT GTTGGTGGCA GTCTGAGCCT GCTGCGTAGC
AAGGATAAGC TTGAGCGTAA TGGACATATT GAAAGCGATA CCTGGCAAGC TGGCGTATAT
GGTTTGCTGA ATCAGGGAGG TCCAGCCTGG TTGGGTAGCG ACGTAACGGC GGGCCGGGCA
GCGATTGCGT CACGCCGCTC GGTGTATCTG CAATCTGCGG GCGGTCCGGT GCTGTTGGAC
AACACGTTGG ATGGCAATAC CGAAGCGCAA TTTGTCGGTG CTCGCGTAAC CGGCGGCTAT
GATTTTCCGC TAGGCGGTCT GCGGACTGGT CCGGTTGCCG GGTTGGATTA TGCGCGTTAT
CGCATCAATG CGTTTGATGA TAAAGGAAAC CTGCGAACTG GCGTGCGGTA TGAAAAACAA
GATGTCGATT CGCTGGAAGC CAGTCTGGGC TGGCGCGTGC GTGGCAAGGT GGAATTCAGC
AACAAAGCGT CTCTGCAACC TTATGCTACG GTGGCGTGGG TGCGTGAATT AGCCGATGGG
CTCGATTCCA GCTTTACGGT GAAAGATCAC GTCGATGGTG CAAACCGCCG TATTGCGGTT
GGAGAGCAGG ATAAGAACTT CGGTCGCGCA ACCGTTGGTG TGCAGTGGCT TGCGGCAGAA
AATCTGAATC TGTATTCCGA GGTCGGTAGC CGTTTCGGTC ATCGGGATGG CGATCAAACG
CGCTATAGCG TAGGCGTGCA GTGGCAATTC TAA
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| Protein sequence | MFKKVAVAVG MACLSVPAWA YDYGDYARET VDTLINDYPG RYRGTANFAG AADWMTQRMA
PGYTTVRQDF SWTAGGTTRS SQNVLASNVG LSSEYIITGA HFDTFFGRPT LQGLDDNASG
ASILTEVARN FSGIQTEKTL VFAAFGAEEE GLRGSRAMVN DLIAQGTAGG LTAMINMDSM
ITGDKLYAHA GNNSVANPAL ASLREQTLRI ANELGIELFT NPGLNASYPA GTGCCSDGDS
FNAAFDIPVL YMEATNWDIG DQDGYEQTTN PAVPGGATWH DPTVDNEAFL TSVLGQERID
QRLRDVSRLV TRLLLEISNT DLLHSAYSAA AMQQAMEESL KRQRQSLSDL HNQRWLLLQN
TTRSAGTLDT AVGIEGDVTP SNGFDRAPQQ RSRQAMAYAL VDYQLSDGVT VGGSLSLLRS
KDKLERNGHI ESDTWQAGVY GLLNQGGPAW LGSDVTAGRA AIASRRSVYL QSAGGPVLLD
NTLDGNTEAQ FVGARVTGGY DFPLGGLRTG PVAGLDYARY RINAFDDKGN LRTGVRYEKQ
DVDSLEASLG WRVRGKVEFS NKASLQPYAT VAWVRELADG LDSSFTVKDH VDGANRRIAV
GEQDKNFGRA TVGVQWLAAE NLNLYSEVGS RFGHRDGDQT RYSVGVQWQF
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