Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1861 |
Symbol | potB |
ID | 8132804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2148422 |
End bp | 2149282 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644865150 |
Product | spermidine/putrescine ABC transporter membrane protein |
Protein accession | YP_003017438 |
Protein GI | 253688248 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.317879 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAGT CGCGTAAACG CTTTCAAAAC ACCATTATCA CACTTATCGT TGCCTGGCTG GTGCTGTTTG TTTTCCTGCC CAACCTGATG ATCATCGCAA CCAGTTTTCT GACGCGCGAT GACACACATT TCGTCAGTCT GGTCTTTACG CTGGAAAATT ACACGCGACT GGTCGATCCG CTTTATGCAT CAGTCCTGCT GCATTCGCTG AACATGGCGG CTATCGCCAC GCTCTGCTGT CTGCTGCTGG GATATCCGTT TGCCTTTATT CTGGCGCGCT TACCGAAAAA AATTCAGCCA CTGATGCTGT TTCTGCTGAT TGTGCCCTTT TGGACCAACT CGCTGATCCG CATTTATGGG CTGAAAATCT TTCTCAGCAC GCGCGGCCAT CTGAATGAAT TTCTGCTCTG GACTGGCCTG ATTGATACGC CGCTACGGAT CATGTACACC TCCGAAGCGG TCATTCTCGG CCTGATTTAC ATCTTGCTGC CTTTTATGGT GCTGCCGCTC TATTCCAGCA TTGAAAAGCT CGATAAATCC TACCTTGAAG CCGCTCGCGA TCTAGGTGCC AATAAGTGGC AAACCTTTAC TCGCGTGGTA ATCCCGCTGA CCATGCCGGG GATTATCGCT GGCTGCCTGC TGGTGCTGCT GCCCGCCATG GGACTGTTTT TCGTGGCCGA CCTGATGGGC GGTGCCAAGA ATCTGCTGAT CGGTAACGTC ATTAAAAGCC AGTTCCTCAA TATCCGCGAT TGGCCGTTTG GTGCCGCGAC CAGTATCTGC CTGACGCTGG TCATGGGCGT GCTGCTGTTT ATCTACTACC GTACAGCCCG CCTGCTGAAT AAAAAAGGAG AGCTGGAATG A
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Protein sequence | MKKSRKRFQN TIITLIVAWL VLFVFLPNLM IIATSFLTRD DTHFVSLVFT LENYTRLVDP LYASVLLHSL NMAAIATLCC LLLGYPFAFI LARLPKKIQP LMLFLLIVPF WTNSLIRIYG LKIFLSTRGH LNEFLLWTGL IDTPLRIMYT SEAVILGLIY ILLPFMVLPL YSSIEKLDKS YLEAARDLGA NKWQTFTRVV IPLTMPGIIA GCLLVLLPAM GLFFVADLMG GAKNLLIGNV IKSQFLNIRD WPFGAATSIC LTLVMGVLLF IYYRTARLLN KKGELE
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