Gene PC1_1588 details

Gene Information

• Locus tag: PC1_1588
• Symbol: ompX
• ID: 8132529
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 1841436
• End bp: 1841951
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 644864876
• Product: outer membrane protein X
• Protein accession: YP_003017166
• Protein GI: 253687976
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3637] Opacity protein and related surface antigens
• TIGRFAM ID: [TIGR03304] outer membrane insertion C-terminal signal

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000727095
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA TCGCGTGTCT TTCCGCTCTG GCTTGTGTAT TAGCCGTTGG CGCAGGTTCT 
GCATTTGCTG GTCAAAGTAC TGTAACTGCA GGTTATGCTC AAGGTGATGC TCAGGGCGTA 
CAAAATAAAG TTAAAGGCTT TAACCTGAAA TATCGTTATG AGCAAGATAA TAACCCACTG 
GGCGTTATTA GCTCTTTCAC CTACCTGGAA AAAAATGGTA GCGATGGCAG CGACTACAGC 
AAAGGCCAGT ACATGGGCTT CACTGCTGGT CCAGCTTACC GTCTGAATGA CTGGGCAAGC 
CTGTACGGTG TTGTTGGTTT CAGCCACGGT AAAGTAACTA ACAACGCTAC CAACGGCCAG 
AACAACAGCA GCAATGACGA TTATGGCTTC ACCTACGGTG CTGGTGTTCA GTTCAACCCA 
ATTCAGGACG TTGCTCTGGA TGTAGGTTAC GAACAAAGCC GTATCCGCAG TGTTGACGTT 
GGTGCCTGGG CTGTTGGCGT AGGTTACCGT TTCTAA 

 

Protein sequence

MKKIACLSAL ACVLAVGAGS AFAGQSTVTA GYAQGDAQGV QNKVKGFNLK YRYEQDNNPL 
GVISSFTYLE KNGSDGSDYS KGQYMGFTAG PAYRLNDWAS LYGVVGFSHG KVTNNATNGQ 
NNSSNDDYGF TYGAGVQFNP IQDVALDVGY EQSRIRSVDV GAWAVGVGYR F