Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1408 |
Symbol | |
ID | 8132347 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1645121 |
End bp | 1646479 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644864698 |
Product | type I secretion membrane fusion protein, HlyD family |
Protein accession | YP_003016990 |
Protein GI | 253687800 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCGT TACGTGAAGT CACATCACAG CCAACAGCCC CACGTACTCA AGTAGAGGAT AACGTTGCGG CAATGCCGTT ACATACCGAT GCCGGACGCT ATTTAAAGCA TGGCCTCTGG CTGGTGCTTA TCGGCTTTGG TGGCTTGCTG CTGTGGGCTG GCATGGCACC GCTGGATAAA GGCGTCGCCG TATCCGGTCG GGTCATTGTC GCGGACAATC GTAAAGCCGT ACAGCCTGTC AGTAGCGGAC GTATCGCTTC ACTCACCGTG CGGGATGGCG ACCGCGTGCA GGCCGGGCAA GTTCTTGCCA CGCTGGATCA AACGCCCGCT CAGGCACAAC GTGACAATCT CGTCACCCAG CTTCAGGAAG CGCACGCGGG CGAAGCGCGT CTGCTGGCAG AACGCGACGA TCTGAGTACG ATTGCTTTCC CAGCCCCCAC AGAGCAGCAC AGCACCGTCA CACAGCAAAT TCAGATCGCC CAGCAGCAGC TTTTCATCAG CCGTCGCGCC GCGCTGCAAC AGGAACGTAC GGCAATGCAG GCTGCCATCA TCGGGGCAAA AGCGCAGTCG CAGGGGTCAC AGGCGCTGCT GGCCAGCAGC CAAACGCAAT TCCAGATTAT CAGCGAACAG CTGCGCGGGC TACGTCCGCT GGCGCAGGAA GGCTATATCG CCCGTAACCG CCTGCTGGAT GTCGAGCGAC AGGCCGCCCA ACTGGCTGGC GCGATTGCGC AGGAACGAAA TAATCAGGTA CAGCTCCAGC AGCAGGTCGT CGAGCTGGAG CAAAAAATTC AGCAGCGTCA GAACGAATAC CAGAAAGAGG TACGCGCCCA ACTCGCCGAT ACCCAGCGTT CCATTCAGGA TCTCACCCAG CGCCTAAAAA CAGCGGAATA TGAACTCCAG CACACGCACA TTCGCGCGCC CGCCAGCGGC ACCGTCGTCG GGCTAGCGCT GCATACCGAA GGCGGCGTAG TCAATAGCGG ACAGATGCTG ATGGAAATTG TTCCCGATGG GCAACCGCTC TTGATTGACG CGCAGTTGCC TATCGAGCTG GTAGACAGAG TCAGCAACGG GCTACCGGTC GAGCTGCTGT TTTCTGCGTT CAACCAAAGC ACTACTCCGC GCATTTCCGG TGTTGTCGCA CTGATCGGTG CCGACCAACT CGTCGAACAA CAGACCGGAA AACCCTATTA CGCACTGCGT ATTCACGTCG ATGAACAGGG TAAACAGCAG CTCGCCGGAC TGGACGTTCG CCCCGGTATG CCGGTGCAAG CCTTTATTCG CACCGGTGAG CGCTCCCTGC TCAACTACCT GTTTAAACCG CTTTCCGATC GCCTGCATCT GGCACTGACC GAGGAGTAA
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Protein sequence | MSALREVTSQ PTAPRTQVED NVAAMPLHTD AGRYLKHGLW LVLIGFGGLL LWAGMAPLDK GVAVSGRVIV ADNRKAVQPV SSGRIASLTV RDGDRVQAGQ VLATLDQTPA QAQRDNLVTQ LQEAHAGEAR LLAERDDLST IAFPAPTEQH STVTQQIQIA QQQLFISRRA ALQQERTAMQ AAIIGAKAQS QGSQALLASS QTQFQIISEQ LRGLRPLAQE GYIARNRLLD VERQAAQLAG AIAQERNNQV QLQQQVVELE QKIQQRQNEY QKEVRAQLAD TQRSIQDLTQ RLKTAEYELQ HTHIRAPASG TVVGLALHTE GGVVNSGQML MEIVPDGQPL LIDAQLPIEL VDRVSNGLPV ELLFSAFNQS TTPRISGVVA LIGADQLVEQ QTGKPYYALR IHVDEQGKQQ LAGLDVRPGM PVQAFIRTGE RSLLNYLFKP LSDRLHLALT EE
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