Gene PC1_0682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0682 
Symbol 
ID8131606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp799196 
End bp800926 
Gene Length1731 bp 
Protein Length576 aa 
Translation table11 
GC content53% 
IMG OID644863967 
ProductRhamnogalacturonate lyase 
Protein accessionYP_003016273 
Protein GI253687083 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGCGAT CTGTCTTGTT GTTGGTGGGG GCCATGCTGG CGCCCTATAG CTATAGCGCG 
CAGGATAATG CGGTGTCGTT ATCCGTTTCT GGTTTGAATA CCGTGCTGGA TAACGGCTTA
CTCAGCGTCG CATTTGGCGA GGACGGCAGC GCGGTGCGTA TGGTGACGGG AGGCAAAAAT
ATCGTCACGA ATTTGTCCGG CGCGGCGCGC GATCCGAGCA AAACTCGTAG CGCTTACCTC
GATTATTATA TTAACGATGT TCATGCTAAA GGCGTCAAAG ATTTTGTCCC CGAGCGGGTA
GAGGTGTTGC GCAACGATCG TGAGATGGCG CATGTCGCCT ATATCGACGA GCGGGACGGG
CTGTTACGGC TTGAATATCA CCTGATTATG CGTCGCGGCG TTAGCGGACT TTACAGCTAT
GTAGTGGCGG AGAATCGCGG CAGTCAGGAC GTTAAAGTCA GTGAATTACG TAACGTATAC
CGCTTCGATC CTGCCCGGTT AGACCATCTC TATAACGGCG ATCGTCAGGG TAAACCGCTG
CTCTACAGCC AGCTTGAAGC CTCGCCGAAG GTACAAGATG AAACCTGGCG GTTGCCGGAT
GGCAGTATCT ATTCCAAATA TGATTTTGCT GGCTATATGC GTGCTGCGCC TTTTTGGGGT
GTTTTTGGTA ATGGCGTCGG GGCGTGGTTG ATTCACGGCA ATCGGGAGTA TTTCTCCGGT
GATGCGCTCA AGCAGGATTT ACTGGTGCAT CAGGATGCGA TCATTTTGAA CTACATGACG
GGTTCACACT TCGGTACGCC AGATATGGTA GCGCCTCCGG GCTGGAAAAA ATTCTACGGC
CCGTGGCTGC TGTATATCAA TCAGGGCGAT ACCGAGCAGA TGCTGGCAGA TGTCCGGCGT
CAGGCGCTGA CGGAAACTGT CAGTTGGCCA TACCAATGGG TGGATGATTC CCGCTATGTG
CGCGATCGCA CCCAGGTGAG TGGACGCGTT GCCAGCCAGC AACCGATGAC GGTGGTGCTT
TCATCATCAT TGGATGAACC GTTTGATGTA CAAACCCGCG GTTATTCGTA TCAGGCAACG
ACAGACACTG AGGGGAATTT TGCGATTTCC CATGTCCGTC CGGGCAATTA CCACCTTGCG
GTCTACGCCA ATAGCGGTAC GCAGCCGGGA ATATTGGCAG AACAAACGCT GTCTGTTTCT
GGTGATAAAC AAGCCCTGCC GGTGATTGCT CTGCCTAAAG CCGAACCCGT TATCTGGGCG
ATTGGACAAG CAAATCGGCA GGCGAGTGAA TTCCGCTTTG GCGACGAGGC ACGCAACACC
CTCTGGCAAC ATGAGGTGCC TGCCAATCTG ACGTTCGATA TTGGCCGCAG CGACTATCAA
CGCGACTGGT ATTACGCGCA GACCAAACCG GGAAAATGGG ATATCTGTTT TGCCCTGCAA
CCTGAGAAGA AAACCTATTT CCTGAATATC GCATTGGCGG CAGCCAGCAA TAGCGGCATG
AGTGAACCGA CCCTGCCACA GCTGGCGGTA GCGGTAAATG GCAGGACGCT GGAAACGCTG
ACTTACGAAA ATGACAAAAC CATTTATCGC GGTGCGCTAC AAAGCGGTCG TTATCACCTA
GCTCGCATCC CTGTGTCATC CCACTTGCTG AAAAACGGCA ACAACACAAT CACACTGCAA
TTAAAAGGCG GCAGCGTGAT GTACGACGTG GTGACCTTAA GCGAGGAGTA A
 
Protein sequence
MKRSVLLLVG AMLAPYSYSA QDNAVSLSVS GLNTVLDNGL LSVAFGEDGS AVRMVTGGKN 
IVTNLSGAAR DPSKTRSAYL DYYINDVHAK GVKDFVPERV EVLRNDREMA HVAYIDERDG
LLRLEYHLIM RRGVSGLYSY VVAENRGSQD VKVSELRNVY RFDPARLDHL YNGDRQGKPL
LYSQLEASPK VQDETWRLPD GSIYSKYDFA GYMRAAPFWG VFGNGVGAWL IHGNREYFSG
DALKQDLLVH QDAIILNYMT GSHFGTPDMV APPGWKKFYG PWLLYINQGD TEQMLADVRR
QALTETVSWP YQWVDDSRYV RDRTQVSGRV ASQQPMTVVL SSSLDEPFDV QTRGYSYQAT
TDTEGNFAIS HVRPGNYHLA VYANSGTQPG ILAEQTLSVS GDKQALPVIA LPKAEPVIWA
IGQANRQASE FRFGDEARNT LWQHEVPANL TFDIGRSDYQ RDWYYAQTKP GKWDICFALQ
PEKKTYFLNI ALAAASNSGM SEPTLPQLAV AVNGRTLETL TYENDKTIYR GALQSGRYHL
ARIPVSSHLL KNGNNTITLQ LKGGSVMYDV VTLSEE