Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0666 |
Symbol | |
ID | 8131590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 771098 |
End bp | 772042 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644863951 |
Product | Flp pilus assembly protein CpaB |
Protein accession | YP_003016257 |
Protein GI | 253687067 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.406757 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTGA ACTCTACATA CGTACTGTCA GGCGCGTTCG TGCTGGCAGG CATTGTTGCG CTGGTGGTGC GTAGCCATCT CTCTTCTGAA CCCCCTGCGC CGCCTCCGGT AGTGGCTAAA GCGCCGGAAA AAATCGCTGT CTTGGTGGCA GCAAAAGATC TGCATCCCGG TGATTTCATT GATTCTAGCT CAGTACGCTG GCAAACCACG GATGAATCAG TTTCCCGTTC GTTTAACTTC GTTCGCGGCC GGGATAGCCA GTTTCTGCTA TTTGGCGCAA CCCTGCGTGA AACGGTAAAG GAGGGGACAC AGCTTAGCAG TAATGTTGTT GTGAAGCCCA ATGAACCGGG CTTTGTTGCC GCCGTGCTGC ATAAAGGGAT GCGGGCTATC TCCGTTCCTA CCAGCGCGAT TGCGAGCAAT GCTGGGCTAG TCTCAGCAGG CGATCGTGTT GATGTGATCC TCAGCATGAG ACGAGACGAT CAGTCAGAGT TACCCGTTAG CCGTAACCAG CCAGTTGTGA TGCCACTTTT GGCTTCGCAG ACCATTGTTC GCGATCTGAG AGTGCTGGCA CTGAATGATA AGGTCGGTAC GCCGGTATAT CCACGTTTGG ATGCGATGGA AGATGGCGCG GCGCTTGATG CCGCAGCCAA GAGTCGTGAG TCAGCCGTGC GTTCTCGTCC TGCTACCTAT CAAACCGTCA CGTTGGAAGT CACGCCGCAG CAGGCTGAGG CACTGACCGT CGCTAAAGAA CTGGGAATTC TGCATTTATC GCTGCGCAGT GCCACTCAGG ATGATGTTGT CGATCCGCTG AAGGAACGAC AGAGCGTGAC TACGGTTCCA CTAGCAACCG ATATCTACGG GGCGCTATCA GCAGGATCCG GCGGACACAA AGTGAAGGTC TATCGCGGTG AGCAAAAAGA CGTGGTGACG TTCCCCTCCC GATAG
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Protein sequence | MKVNSTYVLS GAFVLAGIVA LVVRSHLSSE PPAPPPVVAK APEKIAVLVA AKDLHPGDFI DSSSVRWQTT DESVSRSFNF VRGRDSQFLL FGATLRETVK EGTQLSSNVV VKPNEPGFVA AVLHKGMRAI SVPTSAIASN AGLVSAGDRV DVILSMRRDD QSELPVSRNQ PVVMPLLASQ TIVRDLRVLA LNDKVGTPVY PRLDAMEDGA ALDAAAKSRE SAVRSRPATY QTVTLEVTPQ QAEALTVAKE LGILHLSLRS ATQDDVVDPL KERQSVTTVP LATDIYGALS AGSGGHKVKV YRGEQKDVVT FPSR
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