| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0540 |
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| Symbol | |
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| ID | 8131457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 624281 |
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| End bp | 625750 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644863818 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_003016131 |
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| Protein GI | 253686941 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACG ATTTGACGTT GAAAACTATA AAATTCATGC CGTTTCTGTT CTTGACCACT
TTCATCGTGA GCTGTCTGGG ATTTCGGTTT CGGGTACTGG ATGAGCTGTC GCTGTTTTGG
CCTGCCAATA TTCTGGTTTT TTGTCTCATG ATTAGTTTCA GAGCCAGAAA CGGGACGATA
AAAGGTAAAA CACTGTCTAT CGGTATCGGT TTTTTAGTGA GTTATGTGGC GATGCTATCG
GCGGCGCTGT GGATGGACAA TAACTCACCG TTAAAAACCA AAGTGCTGTT ATGTTTGTGC
AATATGGTCT TTGTGGTAAC GGCCTGGTGC GCCTTTTGCC TGATGTGTCG GTTTGCCGGT
AAGTGGTCGA CATTTGAAAA ATTCAGCAAA TATTATGTCT ATATTATTTT CGCTTCGACG
TTTGTCGGTG CGTTCTCATC CGGCGTGGCG TATGGGGTTT ATGCGTATGT CTACGATACG
GGGAACCGCT ATGCCGAGTT TATGGACTGG TTCAGTGAAC AACTGGGAAC CGGTATTATT
CTCGCGTTCT TTTTCCTGCG CGGTAAAGAT ATCCTGCGGG CGCTGCGGAA TATTCCTCTT
TGTCCTAAGC ACATCAGAGA GAATATTTTT CCCTTTCTGG TCTTCATCAT TTTCTTATTG
GTGAGCCTGT TTTTTCAGGA CGCGAGTCTG ATTACGCTGT CTGTTATTCC GCTCACGCTG
TGTGCATTCA ATTACTCTTT CCCGATCATG TCGTTGCTCT GTGCGATTAC GGGCGTAATA
CTGAATTATC TCTATATTAA TCAGGTCGGT ATACTCATCA ATTCAAATTC TGAGGCGTAC
ATTAATTCGT TTCTCACGAC CGCACGACTG AACATCGCGA TGTTAATTAT GGCGATGTTA
AGCGTCTCTC ATTTTGTTTC GATGAACCGA CGACTGATTA AAATCATCGA AAGCAACAGC
CTGAAGGATG CACTCACGAA TACCTTCAAT CGTCGCGCTT TCCTTAGCAT GTTGAATGGG
AGGCAGGGCT TGCTGATGAA TAAGAGAAAG CGCCAGCTAA CGCTGTTATT TCTGGATATT
GATTATTTTA AGCAGGTCAA CGATACCTAC GGTCATGCCA GCGGCGATGA ATTGATCGCC
AGCTTTGCCC GTATGCTGAG CGCGAATATT CGGCCGAGCG ACATTCTTTG CCGCTGGGGC
GGGGAGGAAT TCGTTATTGC GGCTTATGAT CTGACGGCTG AACAATCCGC AGCGATGGCT
GAAACCCTAC GGCATCTGAC GGAATCCACG CCGCTTGTGC TGTCCGATGG CCGGGAAATC
CGTTTTACGA TCAGTATTGG CGTGGTCACG TTTCCCCAGT ATGAAGGCGG CAACACTTAC
GATTTGATCG GGCTGGCAGA TGAGCAGCTC TACAAAGCGA AAGCGCAGGG GCGTAATCGT
GTGTGTCTGC GTTTGGTCGA AGATATCTGA
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| Protein sequence | MNNDLTLKTI KFMPFLFLTT FIVSCLGFRF RVLDELSLFW PANILVFCLM ISFRARNGTI
KGKTLSIGIG FLVSYVAMLS AALWMDNNSP LKTKVLLCLC NMVFVVTAWC AFCLMCRFAG
KWSTFEKFSK YYVYIIFAST FVGAFSSGVA YGVYAYVYDT GNRYAEFMDW FSEQLGTGII
LAFFFLRGKD ILRALRNIPL CPKHIRENIF PFLVFIIFLL VSLFFQDASL ITLSVIPLTL
CAFNYSFPIM SLLCAITGVI LNYLYINQVG ILINSNSEAY INSFLTTARL NIAMLIMAML
SVSHFVSMNR RLIKIIESNS LKDALTNTFN RRAFLSMLNG RQGLLMNKRK RQLTLLFLDI
DYFKQVNDTY GHASGDELIA SFARMLSANI RPSDILCRWG GEEFVIAAYD LTAEQSAAMA
ETLRHLTEST PLVLSDGREI RFTISIGVVT FPQYEGGNTY DLIGLADEQL YKAKAQGRNR
VCLRLVEDI
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