Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_42570 |
Symbol | pscN |
ID | 4380195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 3787767 |
End bp | 3789089 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639325983 |
Product | type III secretion system ATPase |
Protein accession | YP_791548 |
Protein GI | 116049647 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1157] Flagellar biosynthesis/type III secretory pathway ATPase |
TIGRFAM ID | [TIGR01026] ATPase FliI/YscN family [TIGR02546] type III secretion apparatus H+-transporting two-sector ATPase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.392052 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCGC CTCTCTCTCC TCTCATCGTC CGGATGCGCC ACGCCATCGA AGGCTGCCGG CCGATCCAGA TCCGCGGGCG GGTCACCCAG GTCACCGGAA CCCTGCTCAA GGCCGTGGTG CCCGGCGTGC GCATCGGCGA ACTCTGCCAG TTGCGCAATC CCGACCAGAG CCTGGCGCTG CTCGCCGAGG TCATCGGCTT CCAGCAGCAC CAGGCGCTGC TCACCCCGCT CGGCGAGATG CTCGGGGTTT CCTCCAACAC CGAAGTCAGC CCTACCGGCG GCATGCATCG CGTGGCGGTT GGCGAGCACC TGCTCGGGCA GGTGCTCGAC GGCCTCGGCC GCCCCTTCGA CGGCAGCCCG CCGGCCGAGC CGGCGGCCTG GTATCCGGTC TACCGGGATG CCCCGCAACC GATGAGCCGG CGCCTGATAG AGCGGCCGCT ATCGCTGGGT GTGCGCGCCA TCGACGGCCT GCTGACCTGC GGCGAAGGCC AGCGCATGGG CATCTTCGCT GCCGCCGGCG GCGGCAAGAG CACCCTGCTG GCCAGCCTGG TGCGCAATGC CGAGGTGGAT GTGACGGTAC TCGCCCTGGT CGGCGAACGC GGTCGCGAAG TCCGCGAGTT CATCGAAAGC GACCTCGGCG AACAGGGGCT GCGCCGCTCG GTGCTGGTGG TCGCCACTTC CGACCGACCG GCGATGGAGC GCGCCAAGGC CGGTTTCGTC GCCACCAGCA TCGCCGAGTA TTTCCGCGAC CAGGGACGCC GCGTCCTGCT GCTGATGGAC TCGCTGACCC GCTTCGCCAG GGCCCAGCGC GAAATCGGCC TGGCGGCCGG TGAACCGCCC ACACGCCGCG GCTATCCGCC ATCGGTGTTC GCCGCGCTGC CACGCCTGAT GGAGCGTGCC GGGCAATCCG AGCGGGGCTC GATCACCGCG CTCTACACCG TGCTGGTGGA AGGCGACGAC ATGAGCGAGC CGGTGGCCGA CGAGACCCGC TCGATTCTCG ACGGGCACAT CGTGCTGTCG CGCAAGCTGG CCGCCGCCAA CCACTATCCG GCCATCGACG TGCTGCACTC GGTGAGCCGG GTCATGAACC AGATCGTCGA CGACGATCAG CGCCATGCGG CCGGACGCTT GCGCGAATGG CTGGCGAAGT ACGAGGAAGT CGAGTTGCTG CTGAAGATCG GCGAATACCA GAAAGGCCAG GACAGCGAAG CCGACCAGGC CATCGAGAAG ATCGGGGCGA TCCGCCAGTG GCTGCGCCAG GGTACCCACG AAACCAGCGA TTACGCACAG GCCTGTGCGC AGTTGCGGAG CCTCTGCGCA TGA
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Protein sequence | MPAPLSPLIV RMRHAIEGCR PIQIRGRVTQ VTGTLLKAVV PGVRIGELCQ LRNPDQSLAL LAEVIGFQQH QALLTPLGEM LGVSSNTEVS PTGGMHRVAV GEHLLGQVLD GLGRPFDGSP PAEPAAWYPV YRDAPQPMSR RLIERPLSLG VRAIDGLLTC GEGQRMGIFA AAGGGKSTLL ASLVRNAEVD VTVLALVGER GREVREFIES DLGEQGLRRS VLVVATSDRP AMERAKAGFV ATSIAEYFRD QGRRVLLLMD SLTRFARAQR EIGLAAGEPP TRRGYPPSVF AALPRLMERA GQSERGSITA LYTVLVEGDD MSEPVADETR SILDGHIVLS RKLAAANHYP AIDVLHSVSR VMNQIVDDDQ RHAAGRLREW LAKYEEVELL LKIGEYQKGQ DSEADQAIEK IGAIRQWLRQ GTHETSDYAQ ACAQLRSLCA
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