| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_42250 |
|---|
| Symbol | pscL |
|---|
| ID | 4380361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3768667 |
|---|
| End bp | 3769311 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639325955 |
|---|
| Product | type III secretion system protein |
|---|
| Protein accession | YP_791520 |
|---|
| Protein GI | 116049675 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.0399821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCAT TTGTTGAACT AGACGCCAGT CGCGTACGGC TGGCCCCCGG GCAGGCCCTG
TTGCGCGCCC GCGACTACCA GGACTACCTC AGCGCCAACC GCCTGGTGGA AGCGGCACGC
GAGCGTGCCG CGGAAATCGA GCGCGAGGCC CACGAGGTTT ACCAGGAGCA GAAGCGCCTG
GGCTGGGAGG CCGGACTGGA GGAGGCGCGT CTGCGCCAGG CCGGGCTGAT CCAGGAAACG
CTACTGCGCT GCAATCGCTA CTACCGGCAG GTCGATCGCC AGCTTGGCGA AGTGGTGCTG
CAGGCGGTGC GCAAGGTGTT GCGCCACTAC GACGCTGTCG AGCTGACCCT GGCGGCCACG
CGCGAGGCAC TGGCATTGGT GAGCAACCAG AAGCAGGTGA TCCTGCACGT CCAGCCGGAA
CAGCTGGTCG CGGTGCGCGA GCAGGTCGCC CGGGTGCTCA AGGATTTCCC CGAGGTGGGC
TACCTGGAAG TGGTCGGCGA TGCCCGGCTG GACCAGGGCG GTTGCATCCT GGAAACCGAG
ATCGGGATCA TCGACGCATC GCTCGACAGC CAGTTGGCGG CGTTGCAGGC CGCATTGACG
GAGGGCGTGG CGCGGAGCGG CGAGGAGGAA GGGGACGCCG GTTGA
|
|---|
| Protein sequence | MLPFVELDAS RVRLAPGQAL LRARDYQDYL SANRLVEAAR ERAAEIEREA HEVYQEQKRL
GWEAGLEEAR LRQAGLIQET LLRCNRYYRQ VDRQLGEVVL QAVRKVLRHY DAVELTLAAT
REALALVSNQ KQVILHVQPE QLVAVREQVA RVLKDFPEVG YLEVVGDARL DQGGCILETE
IGIIDASLDS QLAALQAALT EGVARSGEEE GDAG
|
|---|
| |