| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_41110 |
|---|
| Symbol | |
|---|
| ID | 4383093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 3665234 |
|---|
| End bp | 3667063 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639325863 |
|---|
| Product | putative solute-binding protein |
|---|
| Protein accession | YP_791432 |
|---|
| Protein GI | 116049761 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCGCC TCTCCTTCCT GATCCTCGGC CTGGCCGTGA GCCTGCCCAG CTTCGCCGCG
ATTACCCAGA GCCATGGTTA TGCCCAATTC GGCACGCTCA AGTATCCGGC CAATTTCCAG
CACTTCGACT GGACCAATCC CGACGCCCCC AAAGGCGGCA CCTTGCGCCT GATGGCCTCG
GGCAGCTTCG ACACGCTCAA CCCCTACACC CTGAAAGGCA CCAGCCCGAT CGGCACCGGC
GATTTCCTCC AGTACGGCGT CAATGAGCTG AACGAACCAT TGATGGTGGG CACCGGCCTG
TACGACCCGT CCGGCGACGA ACCAGCCTCC AGCTATGGCC TGATCGCGAA GAGCGTGGAA
TACGCGGAAA ACCGCAGCTG GGTGGTATTC AACCTGCGGC CGGAAGCACG CTTCCACGAC
GGCAGGCCGA TCACCGCCAG CGACGTGGCC TTTTCCTATC GCACCCTGGT CAAGCAGGGG
CACCCGATGT ACCGCACCTA CCTGCAGGAG GTGAAGCGGG TCGATATCCT CACCTCCCAC
CGGGTGCGTT TCGTCCTGCG GCGCTCCGGC AACCCGCTGC TGATCCTGCG CCTGGGCGAG
CTTCCGGTGC TGCCGCAGCA TTACTGGAAG GATCGCGACT TCCGCGCCAC CACCTTCACC
GCGCCGCTGG GCAGCGGTCC CTATCGCATC GTCGAGGTCG ATCCCGGGCG CCGCCTGGTG
TTCGAACGCG TGAAGGGCTG GTGGGGCGAA AAACTGCCGG TGAACCGCGG CAAATACAAT
TTCGACCGGG TCGTGGTGGA CTTCTACCGG GACAACGGCG TCGCCTTCGA AGCCTTCAAG
GCCGGCGAGT TCGACTTCTA CATCGAGCAC CAGGCGAAGA ACTGGCTGAA CAACTATCGC
TTCCCCGCGG TTCTGCGCGG CGATGTGATC CGCACGGAAA TCCCGCACCA GATCCCCAGC
CAGACCCAGG CGTTGTTCAT GAACACCCGT CGCGCCGTGT TCAAGGAGCG CGCGCTACGC
CAGGCGCTGG GCGAGATGTT CGACTTCGAA TGGACCAATC GCGCCCTCTT CAGCAATTCC
TACCTGCGCT CGCGCAGCTA CTACCCGAAC AGCGAATTCG CCGCCAGCGG CGTCCCGGAG
GGCCAGGAAT GGCTGTACCT GTCGCCGTAC CGCAAGCAAT TGCCGGCGCA GTTGTTCAAA
CAGCCATTCA GCCTGCCGAC CACCGAGGGG CGCGGCATTC CCCGTGAAAC CCTCAGGCAT
GCACTCGGTC TACTGGCCGA TGCCGGCTGG AAGCTGTCCG GCGACCGACT GCTGAATAAA
AAGGGCGAAC CGCTGCGCTT CGAAATCCTG CTGGTCAATC CGAGCCTGGA GCGTATTCTC
CAGCCCTATC GCGAAAACCT CGCCAGCATC GGCATCGACG CGCGCCTGCG CACCGTCGAC
CGCGCCCAAT ACAAGCAGCG CCTGGACCAG TTCGACTACG ACATGATCCT CATGACCCTG
CCGCAGACCC TCAGTCCCGG CCTGGAACAG TGGCAGTACT TCCACTCCAG CCAGGTGAAG
GTCAAGGGCA GCAAGAATTA CGCGGGAATC GCCAACCCGG TGGTCGACGC CATGCTCAAC
CGCCTGCTCG GCGCCCACAG CCGCGACGAA CAGGTCGCCG CCGCGCGCGC CCTGGACCGG
ACCTTGCTCT GGCAGTACTA CAGCATTCCC AACTGGTACC TCAATTCGCA CCGTCTGGCG
TACCGCAACC GCTTCGCCTT CGTCGCCACC CCGCCCTACA CCCTGGGCCT GCGCGCGTGG
TGGCAGAAAA ACCTGGAGAC GTCCCGATGA
|
|---|
| Protein sequence | MRRLSFLILG LAVSLPSFAA ITQSHGYAQF GTLKYPANFQ HFDWTNPDAP KGGTLRLMAS
GSFDTLNPYT LKGTSPIGTG DFLQYGVNEL NEPLMVGTGL YDPSGDEPAS SYGLIAKSVE
YAENRSWVVF NLRPEARFHD GRPITASDVA FSYRTLVKQG HPMYRTYLQE VKRVDILTSH
RVRFVLRRSG NPLLILRLGE LPVLPQHYWK DRDFRATTFT APLGSGPYRI VEVDPGRRLV
FERVKGWWGE KLPVNRGKYN FDRVVVDFYR DNGVAFEAFK AGEFDFYIEH QAKNWLNNYR
FPAVLRGDVI RTEIPHQIPS QTQALFMNTR RAVFKERALR QALGEMFDFE WTNRALFSNS
YLRSRSYYPN SEFAASGVPE GQEWLYLSPY RKQLPAQLFK QPFSLPTTEG RGIPRETLRH
ALGLLADAGW KLSGDRLLNK KGEPLRFEIL LVNPSLERIL QPYRENLASI GIDARLRTVD
RAQYKQRLDQ FDYDMILMTL PQTLSPGLEQ WQYFHSSQVK VKGSKNYAGI ANPVVDAMLN
RLLGAHSRDE QVAAARALDR TLLWQYYSIP NWYLNSHRLA YRNRFAFVAT PPYTLGLRAW
WQKNLETSR
|
|---|
| |