Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_4595 |
Symbol | |
ID | 6207359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | + |
Start bp | 5897590 |
End bp | 5899512 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641694263 |
Product | RpoD family RNA polymerase sigma factor |
Protein accession | YP_001821466 |
Protein GI | 182416400 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.5682 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCGCA AAGCCAAGTC CGCCGCCGCG GATACCCATT CAGAGGCCGT TGAGGCCGTG ATCGAGAAAA CCGCGTCCGC GCCAACAGAG GCCGCCACCG GCCCCGATAT TCCCGCCGGC GGAATCAATG ACAAGATCCG TCACCTGATC CGGCTCTCCA AGGAGCAGGG TTATCTCACG TTCGACGACA TCAATGAGGC GCTGCCGGAG TCGGTCGAGA ACCAGGAGGA GATCGATAAT GTCCTCTCCA TCCTGCAGAA CCTCGAGATC GAGATCCTCG AACCCGATCA GGTCGACGAC TATAAGCAGC GGATGGAGGA GGCGGAGGAG GAAGAGTCCC GCTCCTCGCA GCACGATATC TTGGACGACC CGGTCCGGAT GTATCTCAAG CAGATGGGTC AGGTTCCGCT GCTGACCCGC GAGCAGGAAG TCGAGATTTC GAAGCGGATC GAGAACGCCG AGTTGAAAGC GCAGGAAGCG CTCTTCCAAG CCACGATCAT CGGCAATTAC ATCGTGACGC TCGGTCAGAA GCTGATCGAC CGCCAGGAGC GGTTCGACCG CGTGGTGATC GACAAGAAAA TCGACAGTCG CGAATCGTAT TTCAAGGGCC TGGAGAAACT CGTGCTCTCC ACCCGCAAGG CAGAAGAGGC CGTCGCCGAC TCGTGGCAGG AATATCTCAA GGCCAAGTCC GACGCCGAGC GGAAGAAAGT CATGGCCAAG CACAAGAAGC GCGAGACCAC GCTGCGGTCC CACTTCGGGA AATTTTTCTT CAAGCTCAAG GTCTACGAGG AGTTTCTCGA ACAGCTCCGG CCCGTGCTCG AGGAGATCGA ATCGCTCGAT CAGCAGCTCG AGCGGGCCAA GCACCCGAAG TCCAAGAAGG ACGCCACGAT CGACACGAAG GTCATTCAGC ACCGGCTGAA GCAGATCGAG ACGATCCACC GCATTGACCC GGCCGAACTG TTGAAGGTGG TTACGCAGAC GCGCGTGCAC GTGCGGGAGG CACACCAGGC CAAGACGGAG ATGGTCGAGG CCAACCTCCG ACTCGTGATC TCGATCGCGA AGAAATACAC GAACCGCGGC CTGTCTTTCC TCGACCTGAT TCAGGAGGGC AACATGGGCC TGATGAAGGC GGTCGAGAAG TTCGAATACC GCCGCGGCTA CAAGTTCTCC ACCTACGCCA CGTGGTGGAT CCGCCAGGCC ATCACCCGCT CGATCGCCGA CCAGGCGCGC ACCATCCGCA TTCCGGTGCA CATGATCGAG ACCTTGAACA AGGTCATGCA GGTGCAGAAG CAGCTCCTGC AGGAATACGG TCACGAGCCG ACGCCCGAGG AAGTCGCCGA CGAGATGAAT CTCCCCGTCG AGCGCGTCCA GCAGATCATG AAGATGGCGC AGCAGCCCAT CTCGCTGCAG TCGCCCGTCG GCGATGGCGA TGACACCAGC TTCGGTGACT TCATCGAGGA CAAATCCGCC GAAAATCCCT ACGACATGAC GGCGTTCTCG CTCCTGCGGG AAAAGATCAT CGACGTGCTC GACTCGCTCA CCGAGCGCGA GCGCCGCGTG CTTTCGCTAC GGTTCGGTCT GATCGATGGC TACAGCCGCA CGCTCGAGGA GGTCGGCAAG CAGTTCAAGG TCACGCGCGA ACGTATCCGC CAGATCGAGG CCAAAGCGCT GCGCAAGATG CGCCATCCGA CGCGCATCCG GCAATTGCAC GGATTCTTCG ATGCCGAGCA GATCGACAAC GCGCAGAATC TAATGAAGGT CGCCGCGACG AGCGGGTTGC CGAACCGCCA GCCCCCCGTA CCCGGTCTGC CGGGTCGGCC CGCGCTCCCG AGCGGATTGC CACAGCGTCC GGCCACGCCG TCTGGTTCCT CCGCCGCGAA CCTGCCGCCC GTGCTGCCGC GGCCCACGCC GCTCAAGCCC TAG
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Protein sequence | MSRKAKSAAA DTHSEAVEAV IEKTASAPTE AATGPDIPAG GINDKIRHLI RLSKEQGYLT FDDINEALPE SVENQEEIDN VLSILQNLEI EILEPDQVDD YKQRMEEAEE EESRSSQHDI LDDPVRMYLK QMGQVPLLTR EQEVEISKRI ENAELKAQEA LFQATIIGNY IVTLGQKLID RQERFDRVVI DKKIDSRESY FKGLEKLVLS TRKAEEAVAD SWQEYLKAKS DAERKKVMAK HKKRETTLRS HFGKFFFKLK VYEEFLEQLR PVLEEIESLD QQLERAKHPK SKKDATIDTK VIQHRLKQIE TIHRIDPAEL LKVVTQTRVH VREAHQAKTE MVEANLRLVI SIAKKYTNRG LSFLDLIQEG NMGLMKAVEK FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TLNKVMQVQK QLLQEYGHEP TPEEVADEMN LPVERVQQIM KMAQQPISLQ SPVGDGDDTS FGDFIEDKSA ENPYDMTAFS LLREKIIDVL DSLTERERRV LSLRFGLIDG YSRTLEEVGK QFKVTRERIR QIEAKALRKM RHPTRIRQLH GFFDAEQIDN AQNLMKVAAT SGLPNRQPPV PGLPGRPALP SGLPQRPATP SGSSAANLPP VLPRPTPLKP
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