| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3828 |
|---|
| Symbol | |
|---|
| ID | 6205452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4972462 |
|---|
| End bp | 4974915 |
|---|
| Gene Length | 2454 bp |
|---|
| Protein Length | 817 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641693495 |
|---|
| Product | glycoside hydrolase family 13 protein |
|---|
| Protein accession | YP_001820702 |
|---|
| Protein GI | 182415636 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.535052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCAC CCGGCTACAG GATCATCCGC GCCTGGCTCG AGTCGCTCAC CTCCGGGGTG
GTCGAGTTGG ACCGCGACTG GCTGGGCGCG CGGCCGCCGC AGTTCTCGAT GGGCCAACAG
TGCCCGGTGC TCGGCGGTCT GGCGCCCGCC TCGCGGCGGA TCACGGGCAG CGCCTTCGGG
TATCGGGTGG AGGGCAACGA CATCGTCTTC GTGCTGCCCG AACTGCAGTG CGCGGGCGTC
GACGTGGAGC GCGACGGCGT CTATCTGGGC GGCGATTTCA ACGGCTGGCA GCAGGCGGTC
GGCTTGGCCG AGTGGCGGAT GCAGCGCAGC GAACTCGAGG GAGAGTCCGT GCTCTCGTGG
TCCGGACCGG CGGCGCGTTT TTTCGATCCG GCCGGACAGC GATTCAAGTT CGTCACGGGC
GAGCACCAAT GGCTGAGCGT GCCCGATGAC GCGGCGAACG CCGTCCGCGA CGCGGACGGG
AACATCAATC GCGCCATCGA TCCGGCACGC ACGGGCCGGC ACTTGTGGAG CTTCGTCTGT
CCAGCGCCGC TGGATCTGGC CGAATCGCTG GTGATTGGCT GGGCGGCGGA GCTGACGCCG
CCGGCGACGC CGCTGGTGCC GGGGCGGTTT TTCTACCAGC TCAAAACGGA CCTGCCGCTG
GGCGCGCTGG TGCGCGAGGG CGAAACGGTG TTCCGGCTGT TTGCGCCGCG AGCACGCTCG
GTGACGTTGT TCATCAGCCC GAACCGCGCC GGGTTGAAGA GCCCACAGCA AGTGCCGCTG
GCGCGGCGGC CGGATGCGGA CGGACGCGCC GGCGTTTGGG AGGTCGCGCT GAACCAGCGG
CTGCACGGCT GGTTTTACTG GTATGTGATC GACGGCGTGC GCGAGGGCCG GGGGGCGTTC
GATCCGACGC AGCGCGTGCT CGATCCGTAT GCGCTGGCGG CGCTCGGGCG CGAGGGGCCT
GGCATCGTGC TCGATCGCGC GTGGGTGGGG CAGGGCGACC GCGGTTTCCG CACGCCCGCG
TGGCAGGATC TCGTCATCGC CGAAGCGCAC GTACGGGATC TCGCGACCCA TGCGCCGGTG
CCGATGACGC CGGCAGAGCG GCGAGGGTTC AGCGGGCTGC GGCGCTGGGT CGAGCACCCG
GAATTTTATC TGCACCGGCT CGGCGTGAAC TGCGTGGAGC TCCAGCCGGT CCACGAGTTC
GATAACCACC CGCACGACCA CTATCACTGG GGTTACATGA CCAACAGCTT CTTCTCACCG
GAGAGCAGCT ACGCGCTCGA TCCGGCGGAA GGCTCGGCGG TGCGCGAACT CCAGGATCTG
GTCCGCGCGT TCCATGGCCG CGGCATGGCG GTGTTGCTGG ACGTCGTCTA CAATCACGTG
GGCGTGCCGC CGCACCTGAT GTTCATCGAC CGGCTCTATT ATTTCGAACA GCATGCGGAC
GGCCGGCTCG TCGATTGGAG CGGCTGCGGC AACGACCTGC GGGCAAACTC GGCGATGGCG
CGGCGGCTGA TCATCGACAG CTGCGTCCAC ATGATCGAAG CGTACGGCGT CGACGGTTTC
CGCTTCGATC TGGCGGAGCT GCTCGGCGTG GAGGTGTTGC GCGAAATCGA GGCGGCGCTC
AAGCGCGTGA AACCCGACGT GGTGCTCATC GCGGAGCCGT GGAGTTTTCG CGCCCACATC
GCGAGCCGGT TGCGCGACAC GGGCTGGGCC TCGTGGAACG ACGGCTTCCG CGATTTCCTG
CGCAAATACG TGCGGGGCGA GGGCGATGCC CGCCGGATGG AGTATTTCCT TAAAGGCTCG
CCCTGGTATT TCGCGAAATG GCCGGCGCAG ACGGTGAACT ACACCGAGTC GCACGACGAC
CGCACGTGGA TCGACATGAT CACGGAGCAT CACGGCTACG ACGGCTTTGC GCCGACCCGC
CGCGACGTGC AGCGCACCCA CTTGATGGCG GCGCTGTTGT TCATGTCGGT GGGGATTCCG
ATGCTCGCGG CCGGACAGGA TTTCCTCCGT TCGAAGCGTG GCGTGAGCAA CACCTACCTG
CGCGGCGATC TCAACGCGCT CGATTACCGG CGGCTGTTCC GCTATCCCGG AACGCACAGC
TATTTCGCGG AGTGGATCGC GTTTCGCCGG AGCTGGCTGG GCCGGCTGGT GCGGCACTAC
GAGCGCGTGA GCGACGCGTT CTTTCAATTC TTCCATCTCG ACGGCGCCCC GGCGTTCGCC
GTCGTCTACA ACGCGGATCG CTCGCTCGGC CCGGAACGCC TGCTGTTCGC CGTCAACCCG
ACGCAAGCGG ATCTCATCGT GCCGCTGGAC GAAGCGACCG CTGGCGCCGG CTGGCGCCAG
CTGGCCAACC GCGAGCGGTT CATCAATCCG CAGACGCCGG GCGCGACGCA ACCGGTCGAG
CCCGCATTGT TCGTGAGTGC GCTTGGCTGT GGGCTTTGGG TAAGTGACAG TTGA
|
|---|
| Protein sequence | MASPGYRIIR AWLESLTSGV VELDRDWLGA RPPQFSMGQQ CPVLGGLAPA SRRITGSAFG
YRVEGNDIVF VLPELQCAGV DVERDGVYLG GDFNGWQQAV GLAEWRMQRS ELEGESVLSW
SGPAARFFDP AGQRFKFVTG EHQWLSVPDD AANAVRDADG NINRAIDPAR TGRHLWSFVC
PAPLDLAESL VIGWAAELTP PATPLVPGRF FYQLKTDLPL GALVREGETV FRLFAPRARS
VTLFISPNRA GLKSPQQVPL ARRPDADGRA GVWEVALNQR LHGWFYWYVI DGVREGRGAF
DPTQRVLDPY ALAALGREGP GIVLDRAWVG QGDRGFRTPA WQDLVIAEAH VRDLATHAPV
PMTPAERRGF SGLRRWVEHP EFYLHRLGVN CVELQPVHEF DNHPHDHYHW GYMTNSFFSP
ESSYALDPAE GSAVRELQDL VRAFHGRGMA VLLDVVYNHV GVPPHLMFID RLYYFEQHAD
GRLVDWSGCG NDLRANSAMA RRLIIDSCVH MIEAYGVDGF RFDLAELLGV EVLREIEAAL
KRVKPDVVLI AEPWSFRAHI ASRLRDTGWA SWNDGFRDFL RKYVRGEGDA RRMEYFLKGS
PWYFAKWPAQ TVNYTESHDD RTWIDMITEH HGYDGFAPTR RDVQRTHLMA ALLFMSVGIP
MLAAGQDFLR SKRGVSNTYL RGDLNALDYR RLFRYPGTHS YFAEWIAFRR SWLGRLVRHY
ERVSDAFFQF FHLDGAPAFA VVYNADRSLG PERLLFAVNP TQADLIVPLD EATAGAGWRQ
LANRERFINP QTPGATQPVE PALFVSALGC GLWVSDS
|
|---|
| |