Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_3737 |
Symbol | |
ID | 6205970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 4862258 |
End bp | 4862896 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641693404 |
Product | type II secretion pathway protein XcpT |
Protein accession | YP_001820612 |
Protein GI | 182415546 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGAGT CCAGCTCGGC TGCCAGTAGC GGATGTGTTC GAACCACCTT GGGTCCGTGC GGTGGGCGAC TGCGGCCGGA TCACGTGTGC GAGCATGGCT ATCCCGTGAA GCGGACGAAT GGCCCTGGCG GTTTTACGCT GATCGAGTTG CTCGCGGTGC TGACAATCAT CGCGCTTTTG GCGGCGATCG TGCTCGGCGC CGGGCGTCGC GTGAGCGAGT CCGGCCGCAT GGCCGAGGCG CACGCGGAGC TCGCGGCGAT CGCGTCGGGG TTGGAATCCT ACTACAGCCA GTATGGCGAC TATCCGCGGA CCGACGATGC GGGAGAGTTG CTGGAGGCGT TGCTCGGGTT GCGGGCGCCG TCGGGCGCGG CGATCTCGGG GCGGGCGTTC ATCGACCGAG CCTGGTTTCG GACGGCGAAC ACGACGGGAG CGGACGGGAC GGTGCGGCCA CAGCTGCTCG ACCCGTGGGA ACAAGGCTAC GTTTACGTCT ATCGCGCGCC GGCCACGGTT CGGGCCCATT CGGACTACGT GCTCTATTCG CGTGGACCGG ATCAGGCGCA CGAGCTCTCG CTGAACGCGG ACGGGTTTCC CAACACCACG GCGCCGGCGA ACGCCGACAA CCTTTACGCG AGCCGATGA
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Protein sequence | MPESSSAASS GCVRTTLGPC GGRLRPDHVC EHGYPVKRTN GPGGFTLIEL LAVLTIIALL AAIVLGAGRR VSESGRMAEA HAELAAIASG LESYYSQYGD YPRTDDAGEL LEALLGLRAP SGAAISGRAF IDRAWFRTAN TTGADGTVRP QLLDPWEQGY VYVYRAPATV RAHSDYVLYS RGPDQAHELS LNADGFPNTT APANADNLYA SR
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