Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_3209 |
Symbol | |
ID | 6208812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 4179515 |
End bp | 4181335 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641692876 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001820089 |
Protein GI | 182415023 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3693] Beta-1,4-xylanase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.818517 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.245162 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTCAC GTCTGTTGCT GTTTGTTTCG CTCGTCGCCA CCGTGCTCGC TCCCTTGAGC GCGCAGACTT CCTTGCCCGC CGGCGAACCG CTGCTCGGGT CGCCGGGACT CGCGGCGTTT GGGCTCCAGA CCATGCCCAA CGCCGTCGAC GCGGTGAGCG TGCAGAAAGT GCCCGCGGCC GCCGCGCCGG GCTTCACCGA AGCCTGGCGC ATCCAGACCC TGCGCGACGT GAACCCGTCG TTCGCGATTC AGCTTCGCGC CCCGAGCTCG CGCGCGCTCA AGCGCGGTGA CATCGGGTTC ATCCGCTTCT TTGCTCGCAC CGTGGAAACA GCCGACGAAA GCGGCACGGC GCGGATCAGC GTCAGCGTGC GTCACGCGAC GCGCCGGGAG ATGGGCTCCA TTGACGAGAG CTTCAACCCG CCGCGCGAAT GGACCGAATA CCTGCTGCCG TTCCGCAGCG CTCGCGACTA CCCCGCCAAC GAAGCTGTCG TCGCGCTCAG CTTCGGGTTC AAGCGTCAGG TGATCGAACT CGGCGGGCTC GAGGCCGTCT TCTACGGCAC GAGCGTGGCG CTAAAGGACC TGCCGCGCAC GCGCTTCACC TACGCCGGTC GCGAGCCCGA TGCCGCCTGG CGCAAGGCCG CGCTCGCGCG GATCGAGCAG ATTCGCAAGG GCGACATCGC CGTCCGCGTC GTCGACGCCG CGGGGAAGCC AATTCCCCAC GCCACCGTTC GGCTCGAGCA AACCCGCAGC GCCTTTCAAT TCGGCACCGC CATCCCGTTC GCCCGGCTCG TCAACGACAC GCCCGACAAC AAGATCTATC GCGAAAAAGT CCTCGAGCTG TTCAACGCCG CCAGCCCCGA GAACGACCTG AAATGGGGCG GCTGGCTTGG CGAGTTCGAA TATGGCACCT ACAGCCAGGC GCAGGCGCTG GGCGGACTGC GCTGGCTGCG TGAACACAAC ATTCCCGCCC GTGGACACGT GCTCGTCTGG CCGGGTTGGA ACAACCTGCC CAAGCACATC CGCGCACTCA AAGGCACGCC GCAGCAGAGC GAGATCCCCG CGCTCGTCCG GGAACACATC ACGGAGATCG GCACCGCGAC CCGTGACTGG CTCGTCGAGT TCGATGTTCT GAACGAGCCG TACACCAACC ACGATCTGAT GGATCTCTTC GGCCCGGAAA TCATGGTCGA CTGGTTCAAG ACGGCCCGCG CCGCGATGCC GAAGATCGCG CTCTACTTCA ACGATTTTAG CAACCACGAC GCGACGACCG ACCGCGAGCA CGTGCAGCAT TTCGAGGACA CCACGCGGTT CCTGCTCGGA CACGGCGCCC CGGTCGACGG CCTCGGGCTG CAGGCGCACA TCGGCGGCAG GCCCAACGCA CCGGAAAACG TCCTGGCCGT GCTCGACCGC TATTGGAACG CGTTCAAGCT GCCTGTGCGG TTCACCGAAT TCGACATCCG CACGAGCGAC GAGGAACTGC AGGCCGACTA CACGCGCGAC TTCTTCATTC TCGCGTTCAG TCATCCCTCC GTCGTCGGCA TCCAGCTTTG GGGATTCTGG GAGAAGTCGC ACTGGATTCC CGTCGCGGCG ATGTATCGCG ACGACTGGTC GGAGAAACCA AACGCCGCCG TCTACAAGTC GCTCGTCCTC GATCAGTGGC GCACGCGCTC CAACGGCACC ACCGCAGCCG ATGGCACGCT GAAGACGCGC GGGTTCTTCG GCGACTACGT CGTCCATGTC GACGTCGGCG GTCGCCAGGT TGAGAAGACG TTCACGCTCG CCGCCGGACA ACCGGGCAAA GTCGAGCTCC AGCTTCCCTG A
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Protein sequence | MSSRLLLFVS LVATVLAPLS AQTSLPAGEP LLGSPGLAAF GLQTMPNAVD AVSVQKVPAA AAPGFTEAWR IQTLRDVNPS FAIQLRAPSS RALKRGDIGF IRFFARTVET ADESGTARIS VSVRHATRRE MGSIDESFNP PREWTEYLLP FRSARDYPAN EAVVALSFGF KRQVIELGGL EAVFYGTSVA LKDLPRTRFT YAGREPDAAW RKAALARIEQ IRKGDIAVRV VDAAGKPIPH ATVRLEQTRS AFQFGTAIPF ARLVNDTPDN KIYREKVLEL FNAASPENDL KWGGWLGEFE YGTYSQAQAL GGLRWLREHN IPARGHVLVW PGWNNLPKHI RALKGTPQQS EIPALVREHI TEIGTATRDW LVEFDVLNEP YTNHDLMDLF GPEIMVDWFK TARAAMPKIA LYFNDFSNHD ATTDREHVQH FEDTTRFLLG HGAPVDGLGL QAHIGGRPNA PENVLAVLDR YWNAFKLPVR FTEFDIRTSD EELQADYTRD FFILAFSHPS VVGIQLWGFW EKSHWIPVAA MYRDDWSEKP NAAVYKSLVL DQWRTRSNGT TAADGTLKTR GFFGDYVVHV DVGGRQVEKT FTLAAGQPGK VELQLP
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