| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2469 |
|---|
| Symbol | |
|---|
| ID | 6204743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3173964 |
|---|
| End bp | 3176669 |
|---|
| Gene Length | 2706 bp |
|---|
| Protein Length | 901 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641692128 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001819351 |
|---|
| Protein GI | 182414285 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACGAGC CGCGCCCATC CACCGATCCC GCCGCCCACC GCCTCGCCGC GGCCGATGTC
GCCGCCGTCC TCCTGCTCGA CTCCCACGGC CGCATCACCG GCGCCTCCGC GAGCGCCCGC
GCGCTCTGGC AGGCCGCCGA GGGCGGACTG ATCGGCGAGC CGTTCGCCTC GCTGTTCGCC
TTCGAGGTGG TCGCCGACGG ACCCGAGTGG TTCGAAGCCC AGTGGGAAGT CCTGCGCGAC
GCCACGCTCG ATCGCACCGC CACACTCGAC GCGCAGCCGC GCGACGGCGC GCCCCGCGCG
GTGCAGGTGC GCCTGGAGCG TTTTTCCGAA ACCTTTTTCC TTGCGACCGT CCAACCTCCG
GCGGCCGCAC CGACGGCCCC CAGCGCGAAC GGCGACGGCA GCGCCTACCA ACTCGTCGCC
GAACAGGGCG CCGCGGGTTT CTTCGACCTC GACCTGATCA CCAACCGCGC GACCTACTCC
CGCTCGTGGA AAAAGATGCT CGGCTACGTC GATGCCGAGT TGCCGGATAC GCTCGAGACC
TGGCGTGAGC TCATTCATCC CGACGACTCC GGCGCCGCGC CGGATCAGGT CGGTCGCAAA
CCCGCCGCCG GCGCACGACC GTTCAGCGTC GAGTTTCGCA TGCGCCACCG GCTCGGCCAC
TGGGTCTGGG TGCAGTGCGT CGGCGTGCAG GTGCTGAACG CCACCGGCCA GCTCGAGCGC
GTGGTCGGAC TCAACCTCGA TGTCTCCGAG CGCAAGGAGA TCGAGGAAGC GAGCCTCGCC
AACGACGAGC GCATGGAGAC GCTCGGCGGC GGTCCGCTTG GCGCGTTCGA CCTCGATTTT
ACCGCGAAGT CCTTCTGGTT CTCGCCCGCC TGGAAAAAGA TTCTCGGCTA CCGCGACGAC
GAGCTGGCCG ACACGCTGGA GACGCTGGCC GCCGTGTTGC CCGCCGACGA AATTCCCGGC
GGCGTGGAAA CCTGGCTGCT GTTGCTCGCG CCGGGACAAA ATACCTTCGT GCTCGCCGAG
GAGCTCGTCG GCAAGGACGG CCAGCGCGTG CCCGTGCTCC TCGGCGCACA CCGCACGCTC
ACGCGCAAGC GCGATCTCGC CCGCATCATC GGCTTCATCT GCACCGCGCC CACGCTCACG
CCGCGCAGCG CCGGCAGCGA CGACGGGCTC GGCGCCGGGC TCGCGCAGGA TGCGTTCGCG
GCCCTCGCCG AGGGCGTCCT CGTCACCGAC GCCACAGGCC GGATTCTCCA CGCCAATCCC
GCCGCCGTGC GATTGCTCGC GCGCAAGCCC GACGAGATCG TCGGCGCCGC CGTCGCGGAT
GTTTTCCAGC TCGTGCACCG CGAGAGTGGC CGGCCCGGCG ACGATCCGTG CGATCGCGCG
CTCGGCGCCG ACCAGCCGCT GCCGCTGTTC AGCGACCACG CGCTGGTCGT GGGCGCGCGA
CCGCCCGCGG CCACCGATGC GGCCTCCTCG CCCGCGGAAA CGGCGCTGCC GATCGTCTGG
ACCGCGCGCG CCTCCAAGGA CGCCGAGAAC AACCCGCGCG GCGTGGTGAT CGTCTTCCGC
GACCCCGGCG AGATGAGCCT CACGCCGGAA GAACTGGTGA AGGCGAATCG CTTCGAATCG
CTCGGCCTGC TCGCCGGCGG CATCGCACAC GACTTCAACA ATCTCCTCGC TACCATCCTC
GCCGGCGTGT CGCTCGCCAA GGACAACCGC AATTACTCCG CCCTCGAGGA TTGCGAAAAA
GCCTGCCTCA CCGCGAAGGG CTTGACCAAG CAGCTGCTCG CGTTCGCCAA GGGCGGCGCC
GGTTCGCAAA GCGTGATTTC GCCGAAAGAA ATCCTGCAGG ACGCGGTGAA GATCGCCGCC
GCCGGTTCCG ACGCGGAGAT CACCGTCAAC CTCACCGAAA ACGTCGATCC GGTGCGCGTC
GATCGCGCGC AGATCCTGCA GGTTTTTCAA AACCTCATCG TCAACGCGCT CCAGGCGATG
CCGCCGAAGC CGCATCGCGC GAAGCTGCAG CTCACCGCGA AAAACGTCAC GCTTGCCGCC
GACCAGATTC CGCCGCTCGC CGAGGGGAAC TACGTCGAGA TCGAGGTGCG CGACAACGGC
AGCGGGATCG CGCCGGAAAA TCTCCAGAAA ATCTTCGATC CGTTCTTCAC GACGAAGAAA
CACGGCACCG GCCTCGGCCT CGCGACGGTG CTCTCCATCG TCCGCAAGCA CGGCGGCCAG
ATCGCCGTCG ACTCGGTCGT GGGCACGGGA ACAGCGTTCA CCGCGTTCTT TCCACGCGCC
GACGCGCCCG TCGAGGTGCA GGCGCGCCGT GCACCGTCGC TGCGCTTTGG CACGGGGCGA
ATCCTGTTAA TGGACGACGA CCCGAAACTC TCCGAGCTCA CGGCGACGAT GCTCGAGAGT
CTCGACTACA AATTCGACCT GGCGAAGAAC GGCGAGGAAG CGATTCAGCT CTACAAACGC
TACCTCAACA TCGGCCGGCC CTACGACGTC GCGCTGCTCG ACATCACCGT CGTCGGCGGC
ATGGGCGGCG AGGAGTGTTT CAAGGCCCTC CGCGACCTCG ATCCGGAAGT GCGCGCGATC
GTCTCCAGTG GTTACGACAA CGAGGACATG GCGCGTCGCT TCCTCGACAT GGGCTTCTGC
GGCTATCTGA CCAAGCCCTA TCGCGTCACC GACCTCGGCA AGGTCCTGAA AGCCGTGCTT
GGGTGA
|
|---|
| Protein sequence | MNEPRPSTDP AAHRLAAADV AAVLLLDSHG RITGASASAR ALWQAAEGGL IGEPFASLFA
FEVVADGPEW FEAQWEVLRD ATLDRTATLD AQPRDGAPRA VQVRLERFSE TFFLATVQPP
AAAPTAPSAN GDGSAYQLVA EQGAAGFFDL DLITNRATYS RSWKKMLGYV DAELPDTLET
WRELIHPDDS GAAPDQVGRK PAAGARPFSV EFRMRHRLGH WVWVQCVGVQ VLNATGQLER
VVGLNLDVSE RKEIEEASLA NDERMETLGG GPLGAFDLDF TAKSFWFSPA WKKILGYRDD
ELADTLETLA AVLPADEIPG GVETWLLLLA PGQNTFVLAE ELVGKDGQRV PVLLGAHRTL
TRKRDLARII GFICTAPTLT PRSAGSDDGL GAGLAQDAFA ALAEGVLVTD ATGRILHANP
AAVRLLARKP DEIVGAAVAD VFQLVHRESG RPGDDPCDRA LGADQPLPLF SDHALVVGAR
PPAATDAASS PAETALPIVW TARASKDAEN NPRGVVIVFR DPGEMSLTPE ELVKANRFES
LGLLAGGIAH DFNNLLATIL AGVSLAKDNR NYSALEDCEK ACLTAKGLTK QLLAFAKGGA
GSQSVISPKE ILQDAVKIAA AGSDAEITVN LTENVDPVRV DRAQILQVFQ NLIVNALQAM
PPKPHRAKLQ LTAKNVTLAA DQIPPLAEGN YVEIEVRDNG SGIAPENLQK IFDPFFTTKK
HGTGLGLATV LSIVRKHGGQ IAVDSVVGTG TAFTAFFPRA DAPVEVQARR APSLRFGTGR
ILLMDDDPKL SELTATMLES LDYKFDLAKN GEEAIQLYKR YLNIGRPYDV ALLDITVVGG
MGGEECFKAL RDLDPEVRAI VSSGYDNEDM ARRFLDMGFC GYLTKPYRVT DLGKVLKAVL
G
|
|---|
| |