| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1957 |
|---|
| Symbol | |
|---|
| ID | 6205899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2454186 |
|---|
| End bp | 2455268 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691606 |
|---|
| Product | band 7 protein |
|---|
| Protein accession | YP_001818840 |
|---|
| Protein GI | 182413774 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0790596 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGACG CCGCCCCTCC CAACCCTGCG CCCGAGCCGA CGGGCGAACC GCGGCCGGCC
GGCGCGCCCG CGGCCGGTGC CGAAGGCCCG GCCGCCGCCA ACGCGGCCCG ACCGGCGCCG
GCCTCCGTCC AGCGCGCGGA GGCTCCCGTG CGTCGGCCCG GGCTGTTGCG CCGGATCCGC
CGCAACGCCG GCGATCTCTG GCGCGAACAC CGCGTGGTGC TGGTGATTGC CGGCTTCCTC
CTCGCCTTCG TGGTCGCGTT CTTCTGGAAC CGGATTTTCA TCCGGATCGA GGCGGGCCAC
GCGGGGGTGC TCTACCGGCT GTTCCAGGGC GGCACCGTGA CCAAGCACGT TTACGGCGAA
GGTCTGCATG TGATCGCGCC GTGGAACACG ATGTTCATCT ACAACGCCCG CGTGCAGCAG
GTCGCCGATG CCTTCACCGT GCTGTCGCAG GACGGCCTCG CCATCAACGT GGAGGTGTCG
ATCCGTTTCC GCCCGCTCTA TGATCAGCTC GGATTGCTGC ACAAGCACGT GGGCTACGAC
TACGTCGACA AGGTGGTGAA GCCGGAAATC CAAGCGCAGT TCCGGTTCGT CCTCGGCCAG
TACAAGCCCG AGGAAATCTA CACCTCGCAA AACTTCATCG TCCAAACGGT GGTGCAGGGC
GCGCTCGCGA ACGTCGGTGA TCGGCACATC CTGCTGGATG ACCTGCTGCT GAAAGCCGTG
ACGCTGCCCC GGCCGGTCGC GGAGGCAATC GAGTCGAAGC TGCGCGCGCA GCAGCTCGCG
CAGGAGTTCG ACTACCGGCT GCAGACCGAG GGCAAGGAGG CGCAGCGCAA AAAGATCGAG
GCGCAGGGCA TCCGCGATTT CCAGGACACG ATCACCGGCG GCGGCATTTC AGAGGAGTTT
CTCCGGTTCA AGGGCATCGA GGCGACGCTG GAGATCGCGC GCTCGCCGAA CTCGAAGGTG
GTGATCATCG GCGGCGGCGA GGACCGGCTG CCGATCATCC TCGACGGCTC GTCGCGCAGC
GGTGACGCCG CGCCGGCGGC GACCCACGAG CGACCGCCCG TCTCCGGTCC GCCGCGACGT
TGA
|
|---|
| Protein sequence | MPDAAPPNPA PEPTGEPRPA GAPAAGAEGP AAANAARPAP ASVQRAEAPV RRPGLLRRIR
RNAGDLWREH RVVLVIAGFL LAFVVAFFWN RIFIRIEAGH AGVLYRLFQG GTVTKHVYGE
GLHVIAPWNT MFIYNARVQQ VADAFTVLSQ DGLAINVEVS IRFRPLYDQL GLLHKHVGYD
YVDKVVKPEI QAQFRFVLGQ YKPEEIYTSQ NFIVQTVVQG ALANVGDRHI LLDDLLLKAV
TLPRPVAEAI ESKLRAQQLA QEFDYRLQTE GKEAQRKKIE AQGIRDFQDT ITGGGISEEF
LRFKGIEATL EIARSPNSKV VIIGGGEDRL PIILDGSSRS GDAAPAATHE RPPVSGPPRR
|
|---|
| |