| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1902 |
|---|
| Symbol | |
|---|
| ID | 6206393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2389138 |
|---|
| End bp | 2390484 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691550 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001818785 |
|---|
| Protein GI | 182413719 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.589471 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC GCCACCACCG GTTTTCTCAC GAACAGGTCG TGTTTTTCCA GGCGCTCGCC
GCCGGGCTGC CGGCGGTCGC GATTTCACTC ATCCTGCTCT GGATCGGCGG CTACAGCGCC
AAGCTCCAGT GGACGCTCGG GCTGCTCATC GTCGGCTGCT GGCTCGGCTT CGCCGCCGCC
GTGCAGGTCC GCGTCATCCG CCCGCTGCAG ACGATGGCGA ATCTTCTCTC GGCGCTTCGC
GAGGGCGATT TCTCCGTCCG CGCGCGCGAC GCCCGCCGCG ACGAACCGCT CGGCGATGTC
ATGGCCGAAA TCAACACGCT CAGTCGCACG TTGCAGGAGC AGCGGCTCAG CGCGCTCGAG
GCCACCGCGC TGCTTCGCAC CGTGATGGAG GAAATCGAAG TCGCCGTGTT CGCCTTCGAT
GCTGAGGGCA AACTCCGTCT CGCCAACCAC GCCGGCCAGC TCCTGCTCAA CAAACCCGCC
GAGCGAATCC TCGGCCGCGG CGCCGCCGAG TTGGGTCTCG AGGAATGCCT CACGGGCGAG
CCCACGCGGA TTCTCGCTAC CACGTTCCCC GGCGGCTCCG GCCGCTGGGG GATGCGCCGC
AGCTTGTTCC GCGAGGGCGG CCGTCCGCAT CACCTCATCG TCATCGCCGA TCTCAGCCGC
ACGCTGCGCG AAGAAGAGCT CCGCGCGTGG CAGCGGCTGG TGCGCGTGCT CGGCCACGAG
CTCAACAACT CGCTCGCTCC GATCAAATCG ATCGCCGGCA GCCTCGGCAG CATTCTGAAA
CGCGAGCAGC GCGCGCCGGA CTGGGAGGAC GACATGCGCT CGGGCCTCGA GATCATCGCT
TCGCGTGCCG AGGGGTTGAG CCGGTTCATG CAAGCCTACG CGCGACTCGC CCGACTACCC
GCTCCGAGCC GCGCACCGTG CGAGGTGGCT CCGCTCGTCA GCCGCGTCAC CGCGCTCGAA
ACCCGCCGCC CCGTCACCGT CGTCGGCGGC CCGCCACTCA CGTTGTCCTG CGACGCCGCC
CAGATCGAAC AGGTCCTGAT CAACCTGCTG AAAAACGCGG TCGACGCCGT GCTCGAAGCG
GCCACGGCCG GCCGGGAGAA CGGCGGGATC TGCGTCGAAT GGAAAAAACT TCCCGGCCAG
ATCGAGATCG CCGTGGTCGA TGACGGTCCA GGCATCGCCA ATTCGGGCAA TCTCTTCGTG
CCGTTCTTCA CGACGAAGCC GGAAGGCTCC GGCATCGGGC TGGTGCTCTG CCGCCAAATC
GCGGAAAACC ACGGCGGCAC GCTCACGCTC GAAAGCCGCG ACGACGGTCA CACCGGCAGT
GTCGCCCGGC TGCGGCTGCC GATTTGA
|
|---|
| Protein sequence | MAKRHHRFSH EQVVFFQALA AGLPAVAISL ILLWIGGYSA KLQWTLGLLI VGCWLGFAAA
VQVRVIRPLQ TMANLLSALR EGDFSVRARD ARRDEPLGDV MAEINTLSRT LQEQRLSALE
ATALLRTVME EIEVAVFAFD AEGKLRLANH AGQLLLNKPA ERILGRGAAE LGLEECLTGE
PTRILATTFP GGSGRWGMRR SLFREGGRPH HLIVIADLSR TLREEELRAW QRLVRVLGHE
LNNSLAPIKS IAGSLGSILK REQRAPDWED DMRSGLEIIA SRAEGLSRFM QAYARLARLP
APSRAPCEVA PLVSRVTALE TRRPVTVVGG PPLTLSCDAA QIEQVLINLL KNAVDAVLEA
ATAGRENGGI CVEWKKLPGQ IEIAVVDDGP GIANSGNLFV PFFTTKPEGS GIGLVLCRQI
AENHGGTLTL ESRDDGHTGS VARLRLPI
|
|---|
| |