Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_1828 |
Symbol | |
ID | 6207756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 2275357 |
End bp | 2277768 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641691476 |
Product | permease |
Protein accession | YP_001818711 |
Protein GI | 182413645 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.762234 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCAG ATCTGCGCTT CGCCCTCCGC CAGCTCGCCA AGTCTCCTGC GTTCGCGGTG ACCGCGATCC TCACGCTCGC ACTCGGCATC GGCGCCTGCA CCGCGATGTT CAGCATCCTC AACGCGGTGC TGCTCCGGCC GCTGCCCTTC CGCGAACCGA CGCGACTCGT CTGGATCGAG AACGTTTATG GCGGCGGCTT GTCCGGTCGC ACCACGCGCG TCGACGTCTT CAACGGCTGG CGCGCGCAAA CCCAGACGCT CGACGCGCTG GCCGCATATT TCGCCTTCTC CGACTACGGC CGGCACACGC TGACGGGCAG TGGCGAACCC GAGCGGCTGC GCGGCGTCGG CGTCTCCGAC AACTTTTTCC CGACCCTCGG CATCCCGCTG CTGCACGGCC GCAACTTCAC CGCCGAGGAA TGTCGCTGGC AGGGCCCCGG CGCGGTGATC CTCAGCCACT CCTTCTGGCA ACGCCGGTTC GCCGGCGATC CCGCCGTCGT CGGCCGCACC GTCACGCTCA ACAACACGCC CACCACCATC GTCGGCGTGC TCCCGCCCAC ATTCGACTTC GATGCGATCT TCACGCCGGG TAACGAGGTG GAGGTGGTGA CCCCCTTCCC GCTGACCGAC GAAACCGCCC GCTGGGGTAA CACTGTGTTC GGACTCGGGC GGATGAAGCC GGGCGTGACG CTCGAGCAGG TGCAGGCCGA GTTGACCGTG ATCAGCCTGC GGCTGCGTGA GTCGATCGGC CGCGGCGACC AGTTCGGCGC GAAGGTGAGC TCGCTCGACA CCGCGCTGCG CGGCCGGTTT CGCAGCGCGT TCCTGCTGCT CAGCGGCGCC GTCGCGTGCG TGCTGGCCAT CGCCTGCGTC AATCTTTCCA ACCTCCTGCT CGCCCGGATC AACGTGCGCC GGCAGGAGTT CGCTGTCCGG ATCGCCCTTG GGGCCCGACG GCGCCATCTC ATCCAGCAGG CGCTCACCGA AAGCCTGCTG CTCGCGTTCG CTGGCGCATT GATCGGTCTG CCCTGCGCCG TCGTCGCCAC CGCCGCGCTC GCGCGGCTGC AGACCTTCGG CGTGCCGCTC TTGCAGGACG CGAGCGTCGA TCCCGTCGCG CTCGCCTTGA CCCTCGGCCT CACGACGCTC GCCGGACTCG CCTGCGGGTT GCTGCCCGCG GTGCACCTCT CGGGCGCTCA GCGGACCGAG TTGCTGCAGC ACTCGAACCA GCAGCGCAGC GCCGGGCGCA CGGCCGCTGT CGCGCGCAAC ACCCTTGTCG TCGTCGAAGT CGCCCTCGCC TGCATGCTGC TCGTCGGGGC CGGCCTGCTC TTCCGCAGCT TCAACGCCCT GCTCCAGGTG AACCTCGGTT TCCAGCCGCA GCAGGCGATG GCGTGGCGCG TCGATCCACC CCGCTCCTTT GCCAACGTCC CCGAAGCCAG CGCCTACCTC GACGGCGCCG TCCGCCGCGT CGCCGCCCTG CCTGGCGTGG AGTCGGTCGG GCTCAGCGAC TGCCTTCCGC TCGGCCGCAA CCGCACCTGG GGTGCCGGCG CCGTCGGCAT TCAATACCCG GAAGGCAAAT ACCCGATCGC CTATCCGCGG ATCGTCGACA GCGGCTATCT GCCCACGATG AAGATCCCGC TCATCGCCGG CCGGCTCTTC GACGAACGTG ATCACGAAAA GGCCGAACGC ACCATCGTCA TCAACCAGAC CCTCGCCCGG ATCGCCTTTC CCGACGGCCG CGATCCGCTT GGTCAAAAAC TGAGGGTCGG GGGAGACGGT GGTTCGACGA TCATCGGTGT CGTTGGCGAC GTCCGCCACA GCTCGCTCGA GCAGGGCGGC GGTCCCGAGA TGTATCTCTG CCTGCGTCAA GGCCAGGACG TCAGCGCGGT GGAAATGGTG GTGCGCAGCA CGCGTCCCGC TGCCGCGCTG ATCCCGGAAG TCCGCGCCGC GCTCGCCAGC TATGATCCCA CGCTGCCGAA CGGCGAATAC TACGCGCTCG ACCGGCTCGT CGACAACGCC GTCGCCCCGC GCCGCTTAAT CACGCGGCTG CTCGGTTTCT TCTCCTCGCT CGCGTTGGTG CTCGCTGCGC TGGGTCTCTA TGGCGTCATC GCCTACTCCG TCGTGCAACG CACGCAGGAG ATCGGCATCC GGATGGCGAT CGGCGCGCAG CAACGCGACG TGCTTGGACT AATCTTCCGC GGCGGACTGA AACTCGTCGC GCTCGGCCTC GCGATCGGAC TCGTTGGCGC GTTCACGCTC ACGCGGTTGC TCAAGAGCCT GCTCTTCGGC GTCACGGCTT ACGATCCGTT GAGCTTCGCC GGCAACGCCG CGTTGCTGCT GGCGGTCGCC GCCGCCGCGT GCCTCATCCC GGCCCTGCGC GCCACGCGCG TCGATCCCGT GGTTGCCCTT CGGGCCGAAT AG
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Protein sequence | MIADLRFALR QLAKSPAFAV TAILTLALGI GACTAMFSIL NAVLLRPLPF REPTRLVWIE NVYGGGLSGR TTRVDVFNGW RAQTQTLDAL AAYFAFSDYG RHTLTGSGEP ERLRGVGVSD NFFPTLGIPL LHGRNFTAEE CRWQGPGAVI LSHSFWQRRF AGDPAVVGRT VTLNNTPTTI VGVLPPTFDF DAIFTPGNEV EVVTPFPLTD ETARWGNTVF GLGRMKPGVT LEQVQAELTV ISLRLRESIG RGDQFGAKVS SLDTALRGRF RSAFLLLSGA VACVLAIACV NLSNLLLARI NVRRQEFAVR IALGARRRHL IQQALTESLL LAFAGALIGL PCAVVATAAL ARLQTFGVPL LQDASVDPVA LALTLGLTTL AGLACGLLPA VHLSGAQRTE LLQHSNQQRS AGRTAAVARN TLVVVEVALA CMLLVGAGLL FRSFNALLQV NLGFQPQQAM AWRVDPPRSF ANVPEASAYL DGAVRRVAAL PGVESVGLSD CLPLGRNRTW GAGAVGIQYP EGKYPIAYPR IVDSGYLPTM KIPLIAGRLF DERDHEKAER TIVINQTLAR IAFPDGRDPL GQKLRVGGDG GSTIIGVVGD VRHSSLEQGG GPEMYLCLRQ GQDVSAVEMV VRSTRPAAAL IPEVRAALAS YDPTLPNGEY YALDRLVDNA VAPRRLITRL LGFFSSLALV LAALGLYGVI AYSVVQRTQE IGIRMAIGAQ QRDVLGLIFR GGLKLVALGL AIGLVGAFTL TRLLKSLLFG VTAYDPLSFA GNAALLLAVA AAACLIPALR ATRVDPVVAL RAE
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