| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1714 |
|---|
| Symbol | |
|---|
| ID | 6207894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2104032 |
|---|
| End bp | 2104484 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691362 |
|---|
| Product | cupin 2 domain-containing protein |
|---|
| Protein accession | YP_001818598 |
|---|
| Protein GI | 182413532 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.259313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGC CCACGCCCAT TAAAATCGGC CAGCTCGAAA TCCGGTTTCA CCGGCACCCG
GCCGACACCG ACGCCAGCTT CTCGGTATTC GAATCGACGA TCCCGCCGGG CGCGCACGTG
CCGGCGCCGC ACAGTCACGT CGGCTACGAT GAAACCGTGT TCGGACTCAC CGGCATCTGT
CATTTCACCG TCGCCGGCAA GGAGGTCGCG CTCGCGCCCG GCGAGATGCT GTTCGTGCCG
CGCGGCGTCG TACACAGTTT CATCAACCGC GGCAATGAAA CCACACGCGT CCTCGTGATC
GTCAGCCCCG GCCTGCTCGG GCCGGAGTAT TTTCACGAGG TCGCCGCGGT CGTGAACGCC
GGTGGGCCGC CGGACCGCGC GCGGCTCGCC GAGATCATGC TGCGCCACGG CATGGTGCCC
GCGACGACGC CGCCGCTCGC TGCCGCGTCG TAG
|
|---|
| Protein sequence | MSRPTPIKIG QLEIRFHRHP ADTDASFSVF ESTIPPGAHV PAPHSHVGYD ETVFGLTGIC
HFTVAGKEVA LAPGEMLFVP RGVVHSFINR GNETTRVLVI VSPGLLGPEY FHEVAAVVNA
GGPPDRARLA EIMLRHGMVP ATTPPLAAAS
|
|---|
| |