| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1128 |
|---|
| Symbol | |
|---|
| ID | 6208834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 1407702 |
|---|
| End bp | 1408871 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641690771 |
|---|
| Product | PRC-barrel domain-containing protein |
|---|
| Protein accession | YP_001818016 |
|---|
| Protein GI | 182412950 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.606388 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA AGATCCCCCC GTCGCTTACG TTCTCGTTCG CCGTTGCCCT GTGCGTCGCC
TCGGCGGCGC CTGCGTTCGC GGCCGGTGCC ACAGCCGCCG CCGAGAAAAA GTCCGGTACC
GACGGGGTTA CGGCCGCGCA GCACCAACTC GCCGGCCAAA GCGCGCAAAA GCTCATCGGG
CAGGACGTGC GCAACCCCGC CGGCGAAGGC CTCGGCCAGG TGAAGGATCT CGTCATCGAC
GCCCGCGCCG GACAGCTCGT GTATGCGCTG GTGAGCTCCG GCGGACTGCT CGGCGTCGGC
GAGCGGATCC GCGCCGTGCC GTTCGCCGCG TTCAAGGACA CCTATCGCGC CGACGGCGAT
CTCGTCCTCC CGATCGACCG GACCGCATGG AACAACCTCG CCGCGATCCG TGAAACCGAA
ATCGACACGC TGCTGAGCGA AGCCCGCGCG AGCACGTTGT TCTCGCAGTT CGGGCTGGAG
TGGAAGGACG AGACGAAGCG GCTCCGGCGC GACGCGAAAG CCGCCGGCGC CGATACCGAT
AGCACGCCCA AGCTCATGCG CGTGGCCAAA CTCACCGGCA AGGACGTCGT CAACGCCGGC
CAGGAGGTCG GCAAGATCGA GGACATCGTG CTGAATTTCG AAAGCCGCCG TGCCTCCGTG
CTCCTGGATC CGAACGACGA CTACACCGGC AGCAACCAGA AGTTCATCGT CGATTTCAGC
CAGCTGTCGC GCTCGCTCGA CGTGCCGGAG AAACTCACGA CCGTTCTGAC GAAAGCTGAT
TTTGCCCGCG CCACGCCCAT GCAGGACGAC TGGTGGATGA TGTCCAGCGG CTATCCTTAC
ATCTGGACGG GCTACAGCAT GGTCGGAGGC CCGGGGTACG CCGCAGCCGT GACGGGCGCC
GAGCGAGCCA TGGGCACCGC CGAGGAACGC CGCGCGGGCC AGGCGAACGC CCGGCCGTCG
GTCGAGGTGA TCCGCGACGC GTTGCGGCGC GACGAGCGGA TCGGCGAGGC CGCCCGCGAC
GTGTCGGTCG AGCAGCGCAA AGACAAGCTG GTGGTGACGG GAACAGTTCC TTCCGCCCAG
GCGAAGCGCC AGATTGGCGA TCGTCTCGCC GAACTCGCTC TCGGGTGGGA GGTCGACAAC
GAGCTCACCG TTCGTTCGGT CGGCGAGTAA
|
|---|
| Protein sequence | MKTKIPPSLT FSFAVALCVA SAAPAFAAGA TAAAEKKSGT DGVTAAQHQL AGQSAQKLIG
QDVRNPAGEG LGQVKDLVID ARAGQLVYAL VSSGGLLGVG ERIRAVPFAA FKDTYRADGD
LVLPIDRTAW NNLAAIRETE IDTLLSEARA STLFSQFGLE WKDETKRLRR DAKAAGADTD
STPKLMRVAK LTGKDVVNAG QEVGKIEDIV LNFESRRASV LLDPNDDYTG SNQKFIVDFS
QLSRSLDVPE KLTTVLTKAD FARATPMQDD WWMMSSGYPY IWTGYSMVGG PGYAAAVTGA
ERAMGTAEER RAGQANARPS VEVIRDALRR DERIGEAARD VSVEQRKDKL VVTGTVPSAQ
AKRQIGDRLA ELALGWEVDN ELTVRSVGE
|
|---|
| |