| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0860 |
|---|
| Symbol | |
|---|
| ID | 6208533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 1060527 |
|---|
| End bp | 1061345 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641690483 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_001817748 |
|---|
| Protein GI | 182412682 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCGG AGCAGCCTGC CCGGGCGACG AAAACGAGCG CGCACTTGAA AACCCGCCAT
CCGGACTGGG AATGGCGGCT ACCTCCACCG CCCGCGTCGG ACGAACCGCT GCTGCTGGCA
CACACCCCCG CGCACCTCAA ACGAATCGGC CACGGACCGG ACTTCGACGA AGACACGCCT
TATTTCCCCG GCATCCACGA GCATGCGCGC CGGGCGGTAA GTGCCGCGAT CGCCGCCGCA
GAACTGGCGG TAAGCTCGCG AGTTCCCGCT TTCTCCTTGA TGCGTCCGCC CGGGCATCAC
GCCACGGCGG ATCGGGCCAT GGGGTTCTGC TACCTCAACC AAGTCGCCAT CGCCGCGCTG
CATGCGCAGC AGCGACTCGG AACTCAGCGT GTCGCCGTGT GGGATTTCGA CGCGCACCAC
GGCAACGGCA CCGAAGCCAT CCTGCACGGT CGCAGCAACA TCCTGTTTAC CTCGGTTCAT
CAACTCCCCG GCTATCCTTA CACCGGCGCC CAGTCGTTCG ACAATTGCAG CAACTGGCCC
GTCCGGCCGC GCACACCGCG GCCGGAACAC CTGGCGGCAT TGCGGGCCTC CCTCGACCGC
ATCATCGAAT TCGCGCCCGA CCTGATCCTC GTGTCCGCGG GTTTCGACGC CTACGCTCGC
GACCCGATCA CCGCCATGAC GTTGGAGGTG GAGGATTTCG GCACGCTCGG CCGCTGGCTC
CGGGAAACCG GCCGTCCCGC CGCAGGATTG CTGGAAGGTG GGTATAGTAA CGACCTGCCT
TTGTTGGTGG ACGAGTTCCT CTCCGCGTGG GAGAAATGA
|
|---|
| Protein sequence | MRPEQPARAT KTSAHLKTRH PDWEWRLPPP PASDEPLLLA HTPAHLKRIG HGPDFDEDTP
YFPGIHEHAR RAVSAAIAAA ELAVSSRVPA FSLMRPPGHH ATADRAMGFC YLNQVAIAAL
HAQQRLGTQR VAVWDFDAHH GNGTEAILHG RSNILFTSVH QLPGYPYTGA QSFDNCSNWP
VRPRTPRPEH LAALRASLDR IIEFAPDLIL VSAGFDAYAR DPITAMTLEV EDFGTLGRWL
RETGRPAAGL LEGGYSNDLP LLVDEFLSAW EK
|
|---|
| |