| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0293 |
|---|
| Symbol | |
|---|
| ID | 6208861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 333864 |
|---|
| End bp | 335441 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641689915 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_001817183 |
|---|
| Protein GI | 182412117 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.806151 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCCGTTT TCCAAAAGGA GAAGGGCTCC TATCGCGAGT TGATCATCAA CTCCGAGCCG
CTGGAAAAAC GCGTCGCGCT GCTCGTCGAC GGCCGGCTGG AAAAATTCGA GATCGAGCGC
GAGTCGGACA ACCGGATGGT CGGCGGCATC TACAAGGGCC GCATCAAGAA TCTCGACGCC
GGCCTCAAGG CGGCATTCGT CGACATCGGC TACACCAAGA ACGCGTTTCT GCATTACTGG
GACATGCTCC CCGCCGCCGC CGACTCGTCC GTCGAGGTCG TCCGCGTCAA CAAGAAGAAG
AATGCCCCGC CGCGGCCGGT TGACCCGACC GTGAAGGACA TCCCGCAGAT GTATCCGCCG
GGCACGGATA TCGTGATCCA GGTCACGAAG GGCCCGATCG GCACCAAGGG CCCGCGCACC
ACGACGAACC TTTCCATCCC CGGCCGCTAC CTGATCCTCA CGCCGTTCTC CGATGGCTGC
GGCATCTCCC GGAAGATCGA GGATCCCGCC GAGCGCAAGC GGCTGAAGCA GCTGATCAAC
GAGCTCACGA TTCCCGAGGG CATGGGCGTG ATCGTCCGCA CCGCCGGCGA GGGCAAGAAG
GCCCGCTATT TCGTTCGCGA TCTGCACATC CTGCTGAAGA CCTGGCAGGA CATCACGAAC
AAGATGCAGA ACGAGCGCGC CCCGGCCTGC CTCTACCAGG AGCCGGATCT CGTCGAGCGC
ACCGTGCGTG ATTTCCTGAC CGAGGAGGTC GACCGCGTGC TGATCGACAA CCGCGAGGAT
TTCGAGCGCA CGCAGCAGCT GGTGGCGATG ATCTCGAAAC GCTCCGCCAA CAAGATCGCG
TTCTACAAGG ACAGCATCCC GATCTTCGAG CGGTTCAACA TCGAGCGGCA GATCGAGCAG
ACCGGCCAGC GCAAGGTTCC GCTGCCGTCC GGCGGCGAAA TCGTCATCGA CGAAACCGAG
GCGCTCATCT CGATCGACGT GAACACCGGT TCGCACAAGA GCCGCGGGGG CGACGAGAAG
AACGTCATCT ACGCCGTCAA CCTCGAGGCC GCGACCGAGA TCGCGCGCCA GATCCGGCTG
CGCAACCTCG GCGGGCTGGT GATCATCGAC TTCATCGACA TGAAGGAGCG GCGCCACCGC
AACGCCGTCT ACGAGAAGAT GGTCCAGGAG ATGTCCTCGG ACAAAGCGAA GAACCACATC
CTGCCGATCT CGACGCTGGG CATCCTGCAG ATGACGCGCC AGCGCCAGCA GGAATCGCTT
TCGAGCAATC TCTACACCGA CTGCCCGTAT TGCCGTGGCC GCGGCATCGT GAAGTCGGCG
ACGACGATGT CGGTCGAGCT CCAGCGCAAG CTGAGTTCGG TGGTGCGGCG GCTGCAATTG
CGCAACGACG GCCGGGAGTA TTCGCTCCGC GTCTTGGTGC ACCCGAGCAT CCTTGAGCGC
CTGCGCAGCG AGGACGCCGA GCTGCTGGTG CGGATGGAGA AACTCTTCGG CGTGAAGTTG
GCCTTCCGCG CCGACCCGAA CTATCATCTC GAGAATTTCA AGATCATCAA CGCCCTCACC
GGCGAAGAGT ATCGGTAG
|
|---|
| Protein sequence | MSVFQKEKGS YRELIINSEP LEKRVALLVD GRLEKFEIER ESDNRMVGGI YKGRIKNLDA
GLKAAFVDIG YTKNAFLHYW DMLPAAADSS VEVVRVNKKK NAPPRPVDPT VKDIPQMYPP
GTDIVIQVTK GPIGTKGPRT TTNLSIPGRY LILTPFSDGC GISRKIEDPA ERKRLKQLIN
ELTIPEGMGV IVRTAGEGKK ARYFVRDLHI LLKTWQDITN KMQNERAPAC LYQEPDLVER
TVRDFLTEEV DRVLIDNRED FERTQQLVAM ISKRSANKIA FYKDSIPIFE RFNIERQIEQ
TGQRKVPLPS GGEIVIDETE ALISIDVNTG SHKSRGGDEK NVIYAVNLEA ATEIARQIRL
RNLGGLVIID FIDMKERRHR NAVYEKMVQE MSSDKAKNHI LPISTLGILQ MTRQRQQESL
SSNLYTDCPY CRGRGIVKSA TTMSVELQRK LSSVVRRLQL RNDGREYSLR VLVHPSILER
LRSEDAELLV RMEKLFGVKL AFRADPNYHL ENFKIINALT GEEYR
|
|---|
| |