| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_30367 |
|---|
| Symbol | |
|---|
| ID | 5001059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009357 |
|---|
| Strand | + |
|---|
| Start bp | 70436 |
|---|
| End bp | 72229 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | |
|---|
| GC content | 56% |
|---|
| IMG OID | 640416480 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001416548 |
|---|
| Protein GI | 145344042 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00270274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0884002 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATG GTAAAGGGCG TTCGCCGCGC GCGCGCGCGG CGCGAGCATT GACGACGTCG
TCGCACGCGC GCAGGCTCCT CGTGAAGCGC GCGTTCAACA GACGCGCGTT GGAGACGCAC
CCAGACAAAG GAGGCGACGC GGACGCGTTC CAAGCGATGT ACGAGGCGTT TCAAGAGCTC
AAACAAGCGT TTCTCGATGG CTTCTCGGAA TTCGCGAAGT GCATCGAATC GGCGCCGGCG
AAGGCGAAGG CGAAGGCGAA GGCGAAACGA ACGATGGTAG ACGCGCCAGA ACTCATGGGT
AAGCGACGGA CGATTCCACC GTACGAGTTC TTTCAAACCG CCGCTGAACG AGACATTCCG
TTCTGGAAAA TTGAGTTGGC GGCGTCGGGC AGAGCTCGCT GCACCGGCTC GCGCAAGTCC
CTCGGCAGCG TCGGTCGCTG TCGAAACACC AATGAAGGAT CGAAGGTGGA TCAGCCGAGA
AGCGTGGGTC CCGGTCCCGG TCCCGGTCCC GGGTCATCGA GAGCGCTCGT CGCCGACGTG
TTCGGAATCA TCAAGAAGAA CGCTGTGCGC GTGGGCTTAA TGGATCCAGA ATCTGGCGCG
TACTGCCGAT TCGTTCATTT GCGATGTTGG CGTGTGCCTC AGGCGGTGTG GTACAATCTT
CCGCAGTACC CCGACGATAC GACTGAGTAT AGCGTCGATG AGTTCAAAAG ACGCTTGGTC
GATATGGACG GCGTCGTCTT CGTCGGGTTG AACAAACTTT GCGATGAAGA CATCACGCTC
GTCGCCGAAC ACGCGATGAA TCAGGAGGCG TGGGCGGCGT TCAATCAGAA GAAATATGTC
GCCGCTCGAG CTGCTGGCCT TCCGTCATCG CGGGTTCAAC TTCTTTCGAA AGACGAAATC
AAAGTACTGC AGAAACTAAT GTCGAAGGCG ACGTCTTTAG TGCAAGAACC AGAGCAAGAC
GAACCGCTCG CCGCGGTGAC GAAGCAGGAA TCAAAACCGG AACCAAAACG AACGGACCAC
GATGAGTACG ACGTCGTGAC TGATGACGAC GAACACGAAG ATGGCTTGCA AGTGGCGCCG
AATGTCGGCA CCGCGATCGC CGTGCAGAAA CCAAAAGAGG AGAAGCCACC ACCGAAGATT
TTGATTCCCG TCCCTGGCGA AAACGGCGCA ATCGCCAACT CACTTCTTCG CGACAATTCC
AAACCCATGA CGTTCGTGCT GACGGGAATT TTTCCGGATC TCGGAGGCGA TCGAATCGGT
CTGATGCAAG GCAAAGACAT GGCGGAAAAG CTGATTCAGC GGTTTGGAGG CGTCGTGCGG
AGCGCGGTTT CAGGCGCAAC TGATGTTTTG CTCGTCGGCG AAGAGCCAGG CGTTTCGAAA
CTATCAGCTG CGCGCACGAA AGCGAACTGC AAAGTTCTCA ATCTCGAACA CATCCTCGAC
ATGATTCACG GGCGCTCCAT TGAAGGGAAA CGGTTGCAAA TTGAAAGATT CAGCACAGGT
TTTCATGGAA ATTCGTTAGC GTACGATATG ACGCGAGCCG AATTGGAAGA GCTACGGACG
GGAGCCAAAG CGCTTCCTTC GACGATGAAA ACAGAGGAGC CACAACTTCT ACCATCGTCC
AAGTCGACAA CGCGTAAGCG CAAAGCTCTT CCTTTGTCCA CGAAAGACGA AGCGCAAAAG
AATTTGACGT TACCCGCACC TGATAAGCCG CCGCGAAATA AGAAGCCAAA ACGCTCGCCG
AAAGCGCCCG TGCGAAGCTC GCGTCGTCTC GCCGCACTGA CGAACGCCGC GTGA
|
|---|
| Protein sequence | MLNGKGRSPR ARAARALTTS SHARRLLVKR AFNRRALETH PDKGGDADAF QAMYEAFQEL
KQAFLDGFSE FAKCIESAPA KAKAKAKAKR TMVDAPELMG KRRTIPPYEF FQTAAERDIP
FWKIELAASG RARCTGSRKS LGSVGRCRNT NEGSKVDQPR SVGPGPGPGP GSSRALVADV
FGIIKKNAVR VGLMDPESGA YCRFVHLRCW RVPQAVWYNL PQYPDDTTEY SVDEFKRRLV
DMDGVVFVGL NKLCDEDITL VAEHAMNQEA WAAFNQKKYV AARAAGLPSS RVQLLSKDEI
KVLQKLMSKA TSLVQEPEQD EPLAAVTKQE SKPEPKRTDH DEYDVVTDDD EHEDGLQVAP
NVGTAIAVQK PKEEKPPPKI LIPVPGENGA IANSLLRDNS KPMTFVLTGI FPDLGGDRIG
LMQGKDMAEK LIQRFGGVVR SAVSGATDVL LVGEEPGVSK LSAARTKANC KVLNLEHILD
MIHGRSIEGK RLQIERFSTG FHGNSLAYDM TRAELEELRT GAKALPSTMK TEEPQLLPSS
KSTTRKRKAL PLSTKDEAQK NLTLPAPDKP PRNKKPKRSP KAPVRSSRRL AALTNAA
|
|---|
| |