| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_12759 |
|---|
| Symbol | CHR3506 |
|---|
| ID | 5002700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009361 |
|---|
| Strand | - |
|---|
| Start bp | 705643 |
|---|
| End bp | 708540 |
|---|
| Gene Length | 2898 bp |
|---|
| Protein Length | 956 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | 640418121 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001419020 |
|---|
| Protein GI | 145349184 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0485802 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.764276 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTCG AACGCGTGCG AGAGGATCAG AACAAGAAGA TTGCGGGAGA TAATAAGGCG
GGGAAGTGGA AGTTTTTGTT GGCGCAAACC GAGGTCTTCG CGCACTTTTT GTCGGGGACG
AAGGCGGCGA ACGAGGCGGC GAACAAGGGC AAGCGCGGGC GCAACAAGAG CCACGCGGCG
GAGGAGTCGG AGGACGCCGA GCTCGTGGAA CACGCTGAGG ATTACCAAGC GGTGCGTTTG
ACGTCTCAAC CGACGTGCAT TAAGTTTGGC AAGATGCGAG AGTACCAAAT TGCGGGTTTG
AACTGGATGA TTCGATTGTT CGATCACGGC ATCAACGGCA TCTTGGCGGA CGAGATGGGT
CTCGGGAAGA CGTTGCAGAC GATTTCTCTT CTCGGTTACC TCGCCGAATA CCGGGGTGTT
ACCGGACCGC ACATGGTTGT CGTGCCGAAA TCCACGCTCG GTAACTGGAT GAACGAGTTT
AAGCGTTGGT GTCCGATGAT TCGCACGTTC AAGTTTCACG GAAACGCCGA AGAGCGCGAG
GCGCAAAAGG CCAAGTTTTT GGTGCCGGGC GGTTTCGACG TGTGCGTGAC GTCTTACGAA
ATGGTCATCA AGGAGAAGAC TGCGTTGAAG AAGTTTCACT GGCGTTACAT CATCATCGAC
GAAGCGCACC GCTTGAAGAA TGAAAATTCT CGTCTTTCCA TCGTCCTAAG AACGTTTTCG
GCGAACAACC GCATGTTGAT CACCGGGACG CCGCTTCAAA ACAACCTTCA CGAGCTCTGG
GCTTTGCTCA ACTTTTTGCT CCCCGAAGTG TTCGGTAACG CCGGTCAGTT CGATGAGTGG
TTTGCGAACG TTGAAGACGG TGAGGGTGGT TCCGGTGCCG TCGTGTCTCA GCTTCACAAG
GTTTTACGCC CCTTCTTGTT GCGTCGATTG AAGACGGAGG TCGAAACCAG CCTCCCGCCG
AAGAAGGAGA CAATTCTCAA GATTGGCATG ACTGAGATGC AAAAAACGTT TTACAAGCGC
ATCTTGCAAA AGGACATCGA CATTGTTAAC AGTGGCGCGG ATAGATCTCG GCTTTTGAAT
ATCGTCATGC AGCTTCGCAA GTGCTGCAAC CATCCGTACT TGTTCCAAGG TGCCGAACCG
GGTCCGCCGT ACATCACCGG GGATCACCTC ATCGAGAGCT CGGGTAAGCT CGCGCTTTTG
GACAAGCTTT TGCCTCGTCT CATGCAACGC GGCAGTCGTG TGCTGATCTT CTCTCAGATG
ACTCGTTTGC TCGACATCTT GGAAGATTAC TTGATGTACA GAAACTACCA ATATTGTCGC
ATCGACGGGA GCACGGATGG CGCCGTCCGC GAAGACCACA TTGACGCCTT CAACAAGGAA
GGTTCGGAGA AGTTCTGTTT CTTGCTTTCC ACGCGGGCGG GTGGTTTAGG TATTAACCTC
GCCACTGCGG ACACCGTCAT CATCTACGAC AGCGACTGGA ACCCGCAAAT GGATCTTCAG
GCGATGGATC GAGCGCACCG CATCGGTCAA AAGAAGGAGG TACAAGTGTT CCGCTTTTGC
ACCGACGGTA GCGTCGAGGA GAAGGTGATC GAGAAAGCGT ACAAGAAACT CGCGCTCGAT
GCTCTCGTCA TTCAACAAGG ACGATTGCAA GAGAACAAGA AGAACCTCGG CAAGGATGAA
CTCTTGGCGA TGGTTCGCTT TGGCGCCGAG AAGATTTTCG ACTCGTCGAC GACGTCGATC
ACGGACGAAG ATGTCGACGC CATCATGGCT CGCGGTGAAG AAGAAACCAA AGCACTCAAT
AGCAAAATGC AAGGTTTCAC GGAGAAGGCC ATTCAGTTCT CTATGGGTGC CGAGAACTCG
CTTTACGAAT TCGAGGACGA AGACGACAAA AACGTCGCCG CGTTGCCAGA GGGCATTGAC
ATGAAGACCA TCATCAGCAG CAACTGGATC GATCCTCCCA AACGCGAACG TAAGAAGAAC
TACAACGAGT CTGATTACTA TCGCAGCGCC ATGGCGCAAG CGGCTCGCCC ATCCAAGCCA
ATGGGACCGA AGATTGCCAA GCTGCAGCAA ATGCACGACT TCCAGTTTTA CAACACCGCG
CGAATTCAAG AAATTTACGA CAAGGATGTT AGACGCAAGA CGTACGAATG GCAGAAAGAC
AAGAAGAAGG AGGAAGCTAA AGCTGCGCAA GATGAGGAGG CGCCCACTGA AGCGGAGGAA
GACGATCCCA ACGCGCCTCC GGCGATCACG GAGGAAGAAA AGGCTGAGCA AGAATCGCTC
CTCTCTCAAG GTTTCACAGA ATGGTCTCGC CGAGACTTCC AAGCCTTCTG CCGACTCAGC
GAGAAGTACG GGCGCGAAGA CGTGGAGTCT ATTGCGAGTG AGATGGAAGG AAAGACTCTC
AAAGAGGTCA AGGATTACGC CGCCGTATTC TGGAAACGTT ACGAAGAGAT TGCCGATCAT
CCGCGCATCA TCAGCAACAT CGAAAAGGGT GAACAAAAGA TTCAGCGTCA ACACGACATG
CTGAAGGCTG TACGAGAAAA GATCGCCAAG TACAAGAATC CGTGGCGCGA GCTCAAGTTG
ACGTATGGTC CGAACAAATT CAAATCGTTC ACCGAAGAGG AGGATAGGTT CTTGTTGTGC
TCCATCCCCG AAGTTGGCTT TGGGAATTGG GACGAGCTCA AGGCGCAGAT TCGCCAGCAC
TGGCAATTCC GATTCGATTG GTTCATCAAA AGCAGAACGC CAAAAGAGCT CGGTCGCCGC
GTGGAGACTT TAATTTCTCT CATCGAGAAA GAGGCTCAGG ACAGAGGCGA CAAGAAGCGA
GACGCCGAAG CCGAAGCCGA AGCCGACGGG AGCGCGCAGA AAAAGGTGAA GGTTGAAGCT
GAAGGCGTGA CCGCGTAG
|
|---|
| Protein sequence | MELERVREDQ NKKIAGDNKA GKWKFLLAQT EVFAHFLSGT KAANEAANKG KRGRNKSHAA
EESEDAELVE HAEDYQAVRL TSQPTCIKFG KMREYQIAGL NWMIRLFDHG INGILADEMG
LGKTLQTISL LGYLAEYRGV TGPHMVVVPK STLGNWMNEF KRWCPMIRTF KFHGNAEERE
AQKAKFLVPG GFDVCVTSYE MVIKEKTALK KFHWRYIIID EAHRLKNENS RLSIVLRTFS
ANNRMLITGT PLQNNLHELW ALLNFLLPEV FGNAGQFDEW FANVEDGEGG SGAVVSQLHK
VLRPFLLRRL KTEVETSLPP KKETILKIGM TEMQKTFYKR ILQKDIDIVN SGADRSRLLN
IVMQLRKCCN HPYLFQGAEP GPPYITGDHL IESSGKLALL DKLLPRLMQR GSRVLIFSQM
TRLLDILEDY LMYRNYQYCR IDGSTDGAVR EDHIDAFNKE GSEKFCFLLS TRAGGLGINL
ATADTVIIYD SDWNPQMDLQ AMDRAHRIGQ KKEVQVFRFC TDGSVEEKVI EKAYKKLALD
ALVIQQGRLQ ENKKNLGKDE LLAMVRFGAE KIFDSSTTSI TDEDVDAIMA RGEEETKALN
SKMQGFTEKA IQFSMGAENS LYEFEDEDDK NVAALPEGID MKTIISSNWI DPPKRERKKN
YNESDYYRSA MAQAARPSKP MGPKIAKLQQ MHDFQFYNTA RIQEIYDKDK DKKKEEAKAA
QDEEAPTEAE EDDPNAPPAI TEEEKAEQES LLSQGFTEWS RRDFQAFCRL SEKYGREDVE
SIASEMEGKT LKEVKDYAAV FWKRYEEIAD HPRIISNIEK GEQKIQRQHD MLKAVREKIA
KYKNPWRELK LTYGPNKFKS FTEEEDRFLL CSIPEVGFGN WDELKAQIRQ HWQFRFDWFI
KSRTPKELGR RVETLISLIE KEAQDRGDKK RDAEAEAEAD GSAQKKVKVE AEGVTA
|
|---|
| |