Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nther_1643 |
Symbol | |
ID | 6316533 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
Kingdom | Bacteria |
Replicon accession | NC_010718 |
Strand | - |
Start bp | 1722728 |
End bp | 1723444 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 642644019 |
Product | pseudouridine synthase |
Protein accession | YP_001917805 |
Protein GI | 188586260 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 0.734555 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTTAC AAAAATTCAT GTCAAGGGCT GGAATAGCAT CTAGACGCAA GTCAGAAGAA CTCATCCAGC AGGGAAGAGT TACAGTTAAT GGACAAGTTA TTACACGTTT AGGAACTAAA ATAAACCCTG ATACGGATAC GGTTAAAGTT GATGGCGAAC CAATAACTCA AGAGGAATCT AATGTTTATA TCATGTTGAA CAAGCCCAAA GATTATATAA CCAGTAAAGA TGACCCTCAA GGGAGAAAAA CTGTCATGGA TTTAATTCAG GTGAAAGAAA GAGTTTACCC AGTAGGTAGG TTAGATTACG ATTCAAGAGG ATTAGTTTTA CTTACCAATG ATGGAGAATT AGCAAATAGA TTAATGCATC CTAAATACAA TATCCCCAAA ACTTATATGG TTAAAGTAGA CAAACTTCCT TTACAGGATA AACTTGATAA TCTAGTTAAT GGGATTTATT TAGAAGAAGG ACTATGTAAA GCAGATCATG TGGAAATACT AGATACTAAA AATAATATAT TAAAAATTAT ATTATCAGAA GGAAGAAAGA GACAGATTAG ACGCATGTTA GCTAGTTTAG GAATAGAAGT TAAGGATTTA AAAAGGGACA GCTTAGGAAC TTTAACTTTA AAAGACTTAT CTGAGGGTAA TTATAGAAAA TTAACAAAAG ATGAAATAGA TAACATAAAA AAATTAGCTG GTTTGACTGA TAATTAA
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Protein sequence | MRLQKFMSRA GIASRRKSEE LIQQGRVTVN GQVITRLGTK INPDTDTVKV DGEPITQEES NVYIMLNKPK DYITSKDDPQ GRKTVMDLIQ VKERVYPVGR LDYDSRGLVL LTNDGELANR LMHPKYNIPK TYMVKVDKLP LQDKLDNLVN GIYLEEGLCK ADHVEILDTK NNILKIILSE GRKRQIRRML ASLGIEVKDL KRDSLGTLTL KDLSEGNYRK LTKDEIDNIK KLAGLTDN
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