Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_4706 |
Symbol | |
ID | 4595216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008697 |
Strand | - |
Start bp | 3468 |
End bp | 4940 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639772495 |
Product | Type IV secretory pathway VirD4 components-like protein |
Protein accession | YP_919155 |
Protein GI | 119714013 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 0.220064 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.843758 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACAG CTCTCAAGCA CGTGAAGCCG CAGGAGGTGG GCTGGCGGCT CGGCCAGGCC GGCCGCAGCG GCCCCGAATT GTGGGTGCCC TTCGACAGGA CGACTTGCGT GATCGGCCCC CAGGGTTCGG GCAAGACCCT GGACCTGCTG GTGCCCGCTC TGCTGGACGC GCCCGGGGGT GCGCTGGTGA CCCTGACCAA GCCCGAGGAC CTGTTCCTCA CCCTGGAGGC TCGACAGCGC GATGGCCGCC CGGTCGCGGT TCTCGATCCG TTCAACGCCG CCCCCGGCAC GCCGGAGCTG GTGTGGGACC CGATCAAGGG GTGTGAGGAC GCGATGCTCG CCGAGCGGCG GGCGAAGGCG TTCGCGAACG GCACCATCAA GGGCGCCACC TCTCAGTCCT CCGACCAGGC TGCCCGGTTC TACGCCGGGG AGTGCGCGAA GGTCCTGCAG GCCTACTTCC ACGCCGCGGC GATCGCCGGC GTCGGGCTGG AGGAGGTGCT GATGTGGGTC TCCAGCCCGC GCGAGTACCC GCAGGCCGAG GAGATCCTGC GTACCCACCG GGCCGCGGAG CCCCTGTGGG ACGGTTTGCT GCGCGGCGCC CTGTACGGCG ACGAGCGGAC CGCCGGCAAC ACGATCACCA CCGTGCAGCA GTCCATGGCG CTGTTCTTCC AGCGCTCGAT CCGGGAACGC TGCGTCCCGT CCGCGACTCG GCCGGCGACC GATCTCGAGG CTCTGATCCG GGCGGGCGGC ACGATCTATC TGCTGGGCCG CGACGACCCG TACGCGAGCG CGTCTCCGCT GATGACTGCT GTCACCGAGC AGATCCTGGA CACGGCCAAG CGGCTGGGGG AGACCTCCCC GCACGGGCGG CTGTGCCCGC CCTTCCTCGC CTGTCTCGAC GAGCTGCCGT CGACCGCGCC GATCCCGACG CTGTCGACCC GGATGGCCAA CGAGCGTGCG CTGGGGCTCT CCTTCATCCT CGCTGCCCAG ACCTGGCGGC AGTTCGTGGT CTGCTACGGC GAGGACGAGG CCCGCACCAT CTACGGGTTG TCCAACAACC TGGTGGTCTT CGGCGGCGGC AAGGACATCC GCTTCTACCA GGAGCTCTCC GACCTGATCG GGTCCACCAG CCACACCGAG ACCCGGTACT CCGCGCGCGG GCACGAGCTG TTCGGCGTGA TGGACCGGTC CTACGACCAG CGGCGGGTGC CGATCCTCGA GCCGGCCGAG CTGCGCCGCA TCGAGCAGCG CAAGGCCCTG GTCCTGGCGG AGATGTACGA CCCGATCATC GCGAACCTGC ACCGCTGCAT CGACGGCAAG CGCGGCAAGG AGCTGCTGGC CGCGCAGGAG CGTGCCCGGC TCGCGGCGCG CCACGGCGAC GCCGCGGAGC CCATCCACCC GGTGCCGGTC GAGCCCACGT TGCCGACCGA GCCGGTGTCC CGGACCCGGC AGCGGCTCGG GATGCCGAAG TAG
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Protein sequence | MTTALKHVKP QEVGWRLGQA GRSGPELWVP FDRTTCVIGP QGSGKTLDLL VPALLDAPGG ALVTLTKPED LFLTLEARQR DGRPVAVLDP FNAAPGTPEL VWDPIKGCED AMLAERRAKA FANGTIKGAT SQSSDQAARF YAGECAKVLQ AYFHAAAIAG VGLEEVLMWV SSPREYPQAE EILRTHRAAE PLWDGLLRGA LYGDERTAGN TITTVQQSMA LFFQRSIRER CVPSATRPAT DLEALIRAGG TIYLLGRDDP YASASPLMTA VTEQILDTAK RLGETSPHGR LCPPFLACLD ELPSTAPIPT LSTRMANERA LGLSFILAAQ TWRQFVVCYG EDEARTIYGL SNNLVVFGGG KDIRFYQELS DLIGSTSHTE TRYSARGHEL FGVMDRSYDQ RRVPILEPAE LRRIEQRKAL VLAEMYDPII ANLHRCIDGK RGKELLAAQE RARLAARHGD AAEPIHPVPV EPTLPTEPVS RTRQRLGMPK
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