| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3989 |
|---|
| Symbol | |
|---|
| ID | 4598124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4210257 |
|---|
| End bp | 4211102 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 639778594 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_925173 |
|---|
| Protein GI | 119718208 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1877] Trehalose-6-phosphatase |
|---|
| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTCA CCTCGCCCGA GGGGGAGCAG AAGTACGCCG CGCTCGTGCG CGCCGCGAGC
CGGGCCGTGG TCGGCCTCGA CTTCGACGGC ACCCTGTCGC CGATCGTGGA CGACCCCGCG
CAGGCGCGCA TCCACCCGGA GGCCCGCGAG GTGCTCGTCG AACTCGCCGC CGAGGTCGCC
GCGATCGCGG TGATCACCGG CCGCCCCGCC CGCCAGGCCC TCGACCTCGG CGGCCTCGAG
GAGGTCGGCG ACGCCGTCGC CGCGGCCGGC AAGGACCTCT TCGTCTTCGG CCAGTACGGC
AACGAGCGGT GGAGCGCGAA CCGGCGCCGG ATCATCTCCC CGCGGCCGCC CGCCGGGCTC
GCGACCTTCC TCCGGGACCT GCCGCGCGCC CTGCGCACCG CCGGCGCGGC CGACGCGTAC
GTCGAGGAGA AGGGCCTCGC GTACGCCGTG CACACCCGCC GGCTGCCCGA CCCCGACGCC
GCGTTCGAGC GGCTGCTGCC GGTGCTGCGG GAGCTGGCCG GTCGCAACGA CCTGGTCCTC
GAGCCCGGCC GCCGGGTCAT CGAGGTCCGC GCGCCCGGCA TGGACAAGGG CCAGGCCGTC
GACAGGCTGG TCGAGGAGGT GGGTGCCGGT GCGTTCCTCT TCGCCGGTGA CGACCTGGGC
GACGTCGAGG CGTTCGAGGC CGTCGGCGCG CTCGCCAAGA ACGGGCTGCC CACCCTGCTG
GTCTGCTCGG CCTCGTTCGA GCAGAGCGCC CTGGTCGAGC TCTCCGACGT CGTCGTCGAC
GGCCCCGAGG GCGTCCTCGA GCTGCTCCGC CGGCTCACCG CCGACGCCCG CGCCGCCCGG
GTCTGA
|
|---|
| Protein sequence | MEFTSPEGEQ KYAALVRAAS RAVVGLDFDG TLSPIVDDPA QARIHPEARE VLVELAAEVA
AIAVITGRPA RQALDLGGLE EVGDAVAAAG KDLFVFGQYG NERWSANRRR IISPRPPAGL
ATFLRDLPRA LRTAGAADAY VEEKGLAYAV HTRRLPDPDA AFERLLPVLR ELAGRNDLVL
EPGRRVIEVR APGMDKGQAV DRLVEEVGAG AFLFAGDDLG DVEAFEAVGA LAKNGLPTLL
VCSASFEQSA LVELSDVVVD GPEGVLELLR RLTADARAAR V
|
|---|
| |