| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3940 |
|---|
| Symbol | |
|---|
| ID | 4598075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4149699 |
|---|
| End bp | 4150748 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 639778545 |
|---|
| Product | RDD domain-containing protein |
|---|
| Protein accession | YP_925124 |
|---|
| Protein GI | 119718159 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.10018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC ACGCCGTACC GGTCCGACCG CCGGCCGACC CGGACCGGAG GTTCTACGCG
TTCGTCGTCG ACCGGCTGGC CGCGTGGACG CTCGACGCGG TCGCGGCCTA CCTCGCCTAC
CGCCTCCTGA TCGACCGTGG TCACCTGCTC GCGGGTGTCC TCGTGATCCT CGGTTGCGTG
CTGCTCGTGG GGGCTGGGTT CGCCGTCGTG CTCGGGCTCA CCGGCAGCTC GCCCGGCCGG
GCCGCCACCA CGACCGGGCT CGTCGGCGCC GACGACGGCG CCCCGATCGG CGTCGCGGCC
GCGCTGCGCC GCCAGCTGGT GCTCGGCCTG GCGACGCTGC CGACCTTCGG CCTGGGTGCC
GCCGTCCTCG CCTGGACGGC GGTGGCCGAC CCCGGCGGAC GGCGGCGCGC CTGGCACGAC
CGGATCGCCG GCTCCGAGGT CGTCGACGTA CGGCGAGCGC CGGCCGAGCC CGCGCCCGTG
GAGCTCGGCC CGCGTCACGT CGTGAACCTG ACGGCGCTCC GGCTGGTCCC GGTCCCCGCC
GCGACCGCAC CACCCGGCCC ACCACCCCCG GCGCCACCGC TCGCACCCCC TCCCGCCCCG
CCACCCCCAC GTCCGGCGCA ACCCCCGCCG GCCGCACCGC CCGGGCGGCA GCGGCTCGGC
CACCCACTGG TGCCCGACCC GGCTCCTCCG GGCCGGTGGC GGATCGGCTT CGACTCCGGC
GAGAGCCTCG TGCTGGAGGG GCCGGCGCTG GTCGGTCGCC GACCGGAGCC GCGGGCCGGC
GAGCCGGTGG TCCACCTGGT CGCACTGCCT TCGGAGGACA TGTCGCTGTC GAAGACGCAC
GCGCACCTGG AGGTGGACGC CGACGGGGTC CTCGTGATCG CCGACCGCGG CTCGACCAAC
GGCTCGATCC TGATCCGGCA GGGTGCCGCC CGCGAGCTGC CGGTCGGCCG GTCGACGACC
CTGCTCGACG GTGACCTGGT CCGCCTCGGC GACCGGGAGA TGCGCGTCGA CCGCGACGCC
GGCCCCGACG CCGGGCCGCC CGTTCGATAA
|
|---|
| Protein sequence | MTDHAVPVRP PADPDRRFYA FVVDRLAAWT LDAVAAYLAY RLLIDRGHLL AGVLVILGCV
LLVGAGFAVV LGLTGSSPGR AATTTGLVGA DDGAPIGVAA ALRRQLVLGL ATLPTFGLGA
AVLAWTAVAD PGGRRRAWHD RIAGSEVVDV RRAPAEPAPV ELGPRHVVNL TALRLVPVPA
ATAPPGPPPP APPLAPPPAP PPPRPAQPPP AAPPGRQRLG HPLVPDPAPP GRWRIGFDSG
ESLVLEGPAL VGRRPEPRAG EPVVHLVALP SEDMSLSKTH AHLEVDADGV LVIADRGSTN
GSILIRQGAA RELPVGRSTT LLDGDLVRLG DREMRVDRDA GPDAGPPVR
|
|---|
| |