Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_2246 |
Symbol | |
ID | 4597792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 2396507 |
End bp | 2398027 |
Gene Length | 1521 bp |
Protein Length | 506 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639776845 |
Product | Type IV secretory pathway VirD4 components-like |
Protein accession | YP_923438 |
Protein GI | 119716473 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCGCC CCGTGCGGGG ACAGCGTTCC CGAGGTGGCG CGATGAAGCT GAGGTTCGAC CCCTGGGACG TGGGCTGGCG CATCGGTAAC GCCCACGAGC CGCGAGGCGG CGAGCTGTGG GTCCCGTGGG ACCGCACCGC CGGCGTAATC GGCCCGCAGG GATCCGGCAA GACCCTCGAC CTGCTCACCC CTGCACTGCT CGGCGCTCCG GGTGCCGCCC TGGTGACACT GACGAAGGTC GAGGACCTGC TGCTCAGCCT CACCGAACGC TCCCGCGACG ACCGGCCCTG CGTGGTGCTC GACCCCTTCG GCCTGGCCGA GGGCGTCGTC GACGAGCTGA TCTGGGACCC GATCGCCGGC TGCGTAGACC CCAAGGTCGC CGAGCGGCGC GCCAAGGCTT TCACCGCCGG CACCGTCAAG GGCGCGATCA CCGGCGGCAC CGGCGACGAT GCTGCGCGGT TCTACGCCGC CGAGTCCGCG AAGGTGCTGC AGGGCTACTT CCACGCCGCG GCGCTGACCG GTAGGACGCT CGAGGACGTG CTGCAGTGGG TCGCCAACCC CACCGCAGCC ACCCAGCCGA TGGAGATCTT GCGGCGGCAC CCGCACGCCG AGCCGTTCTG GCACGGCCTC CTGCACGGTG CGCTGAACGG TGACGACCGC ACCGCCGGCA ACACCGTCAC CACGGTGCAG CAGGCGGTCT CGCTGTTCTT CCAGGCCGAC ATCCGCCGCC GCTGCATTCC CAGCCCCGGA CGTCCCGCCA CCGACCTCGC CGACGTGATC CGTCGACGCG GCACCATCTA CCTGCTCGGC CGCGAAGACC CCTACGCCTC GGCCAGCCCG CTGATGACCG CCGTGGCCGA GCACGTCTTG GACACCGGCC TGCTCCTGGC CAACAGCTCC CCGCGGGGCG GCCGGCTGTG CCCGCCCCTG GTCTCGGTGC TCGACGAGCT GCCGTCGACC GCGCCGCTTC CGACCCTCCG TACCCGAATG GCCAACGAGC GCGCCCTGGG GCTGTCGTTC ATTTGGGCCG CCCAGACTCG GCCCCAGCTG ACCAGCATCT TCGGTGAGCA CGAGGCCCGA GCACTGCTCG GCCTCACCAA CGCCCTGGTG ATGTTCGGCG GCTCCAAGGA CGTCGCCTTC AACCAGGAGA TCTCCGACCT CCTCGGAACG GTCCGCATCG GGCGGGTCAC CCACTCCACC GGCGGAGCCA GTGGCGGTGG GCGCAGCTTC TCCGGCGACG ACATCCCGAT CATGCGGCCG GAGGAAGTCC GGCAACTGCC CGAACGCCAA GCTCTGGTCG TCGCCGAGAA CGGCAAGCCG ATCATCGCCA AGCTGCACCG CTGCGTCGAA GGCAAGGCAG GGGAGCGCCT GCTGGCCGAC CAGCGGGCGC TGCGCGAGCG CCTCACCAAC GACCGGCGCA TGGTCATCAC CCCCGAGGCC CGAGCCACCG CCGCGCTCGT CGAGGCGCGC CGTCTCGGTT TCGTCGACGA CGAGACCGAC CACGCAAGGA GTGAACTGTG A
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Protein sequence | MPRPVRGQRS RGGAMKLRFD PWDVGWRIGN AHEPRGGELW VPWDRTAGVI GPQGSGKTLD LLTPALLGAP GAALVTLTKV EDLLLSLTER SRDDRPCVVL DPFGLAEGVV DELIWDPIAG CVDPKVAERR AKAFTAGTVK GAITGGTGDD AARFYAAESA KVLQGYFHAA ALTGRTLEDV LQWVANPTAA TQPMEILRRH PHAEPFWHGL LHGALNGDDR TAGNTVTTVQ QAVSLFFQAD IRRRCIPSPG RPATDLADVI RRRGTIYLLG REDPYASASP LMTAVAEHVL DTGLLLANSS PRGGRLCPPL VSVLDELPST APLPTLRTRM ANERALGLSF IWAAQTRPQL TSIFGEHEAR ALLGLTNALV MFGGSKDVAF NQEISDLLGT VRIGRVTHST GGASGGGRSF SGDDIPIMRP EEVRQLPERQ ALVVAENGKP IIAKLHRCVE GKAGERLLAD QRALRERLTN DRRMVITPEA RATAALVEAR RLGFVDDETD HARSEL
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