| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1580 |
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| Symbol | |
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| ID | 4595520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 1673181 |
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| End bp | 1678574 |
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| Gene Length | 5394 bp |
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| Protein Length | 1797 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639776179 |
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| Product | DNA primase catalytic core |
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| Protein accession | YP_922781 |
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| Protein GI | 119715816 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core
[TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.429508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCGGCG GGCCTTTTTG CGCCCGTGGG AACTGTCCTT TCGCCCGGCA CCGCGCGCTT
GAAGGCGTCG TGATGAGTCT GCGGAAGCTG ACCGCGGGTG ACGGCTACAG CTACCTCACC
CGCCAGGTCG CCGCGCACGA CACCACCGAG AAGGGCCACA CGAGCCTCGC GGACTACTAC
GACGAGAAGG GCGAGTCGCC CGGCCGGTGG ATGGGCTCGG GACTCACGGG ACTGGGAATG
AACTCCGGCC AGGGGGTCAC GGCGCAGCAG ATGAAGGCGC TCTACGGGTT GGGCATCCAT
CCGGACGCGG CGAACATCGA GGAGCGCCTC GCCGAGCAGG GCGCCAGCCG CGCCGAGGTC
GAGGCGGCGA TCGCCCTCGG CAAACGATTC CCGATCCACG ACACGGCTTC GACCTTCAAC
GTCCGTGTCG CGGAGGCCTT CACGGCGTAC AACGCACAAC ACCGCCAGAA GTGGAATGCC
CCGATCCGGC CCGAGGAAAG AGCACGCATC CGGACCCAGA TCGGCACGGC GATGTTCGTC
GAGGGCCACG GCCGCGAGCC GCAGGACGCC CGCGAGCTGT CCGGGTTCAT CGCCAAGGCT
TCACGCCAGC CGACCAGCGC GGTCGCCGGG TTTGATCTCA CCTTCTCTCC GGTCAAGTCC
GTCTCGGCGC TTTGGGCTCT GGCCCCCAAG GAGGTTGCCG CGGACATCCG CGCGGCGCAC
GACGCTGCCG TTGTCGACAC GCTGACGTGG CTGGAGCGCG AGGTCGCGCA CACTCGCGTC
GGCAGCGGCG GCGTCAGGCA GGTCAAGGTC CGCGGTCTCG TCGCCGCTGC CTTCACGCAC
CGCGACAGTC GTGCCGGCGA CCCCGATCTC CACACGCATG TTGCCGTCAG CAACAAGGTG
CAGGCCGAGG ACGGACATTG GCTCGCCCTC GACGGTCGCC TGCTGTACGC GGCCAAGGTG
ACAGCCTCCG AGCACTACAA CACCCGCGTC GAGGCCGAGC TGGTCGCGCG GCTGGGAGTC
GAGTTCGCGG ACCGGGACGA CACGGTCGGT GGCAAGGTTC CCGTCCGGGA AATCCGCGGT
GTCAGCACCA CGCTCACGCG CTGGTGGTCC CGTCGCCGAG TCGCGATCGA GGCCCGTCAG
GCCGAGATCG CAGCCGAGTT CCAAGGGCGC TTCGGGCGCC CACCGACCGC CATCGAGGCG
AAGAGCCTCG CCGACCAGGC GACTCTGGAG ACGCGCGACG CCAAGCACGG CCGCCGCAGC
GAGCGCGAGC AGCGGGACGA GTGGCGGGCC GAAGCCGACG ACGTCCTGGG CGACCCTGCC
GAGGTCGACG AGATGTACTC CCGGGCGGTC GGCCGCCGGA ACGGTGGCCG GACGGCGACG
CGAGACTGGG TCGAGGACGT CGCCGCGGCG ACGATCGCTT TCGTCGAGGA GTCACGAGCG
ACGTGGAACG TGTGGCATCT CCTCGCCGAA GCCCAGCGCC AGGCACGGCG TGCAGGCATC
GCCCGCGATG ACGTCGACCG GGCCGTTGAC CAGGTCGTTG ATGCCGCGAT CTCCCGGTCC
GTCAGGCTGG GAGTCGACGA CCCGATCTCC GAGCCGCCCC CGCTGCAGCG CCCGGATGGC
GCGAGCGTGT ACGACGTCCA CGGCGCGACG CTCTACACGT CGGCCAAGGT TCTGCTCGCC
GAGGAGGAGA TCCTCAACCT CGCCGGGCGA ACCGGAGGAC ACGCGCTCGC CGACGTACGC
GTCGAAGTGG CCATCGCAGG CGCCGCGGCC AACGGATTCG AGCTCAACGA CGCCCAGGCG
GCGATGGCGC GCGACCTCGC CACGTCCGGC GCCGTCGTCC AGCTCGCCCT CGCTCCCGCT
GGGACCGGCA AGACCACCAC CATGAGCGTC CTCGCCGACG CGTGGGCAGC GGGCGGCGGC
CAGGTGATCG GGCTGGCGCC GTCGGCGCAA GCCGCCCATG AGCTCGGCCA GGCCGTCAGC
GGCTACACCG ACACCCTCGC CAAGCTGACC TGGACGTTGG CCAACGAGCC GTCCGTTGCT
TGGCCCCGCT GGATCCGCGA CATCGGGCCG CAGTCGCTGG TCATCGTCGA CGAAGCCGGA
CAGGCGGCCA CCACTGAGTT GGCCGCCGCC GTGCGCTTCG TCGCCGAGCG CGGCGGCGCC
GTACGACTCA TCGGCGACGA CCAGCAGCTC GCCGCAGTCG GAGCTGGCGG TGTCCTGCGC
GACATCCAGC AGCAGTACGG CGCCTCGACC CTTTCCGAGG TCCGCCGCTT CGACGACCCG
GCCGAGGCGG CCGCGACCCT CGCGGTGCGC GAAGGCGACG CGGCCGCACT CGGGTTCTAC
GCCGACAACG CGAGGATCCA CGTGGGCGAC CTGAGCGCGG TGGCCGACCA GGCGTACGAC
AGCTGGGCGT CCGATCGCGC CGCCGGGCTG GACTCGGTAC TCCTCGCTCC GACACGCGAA
CTCGTCTGCC AGCTCAACGC TCGCGCCCGG GCCGACCGGC TCACGGCGAC CGCCACTGTT
GGTCCGGAAG TCGACCTCGC CGACGGCAAC CGAGGCTCTG TCGGCGACGT GATCGTCACG
CGGCGCAACA GCCGGCGGCT CGTCGTCTCC CGGAGCAACT GGGTCAAGAA CGGCGACCGC
TGGCGCATCG AGAAGGTCCT GGGCGACGGC GGCCTCCTCG CCCGACACCT CGAGCTCGGT
CGCACTGTCG AGCTCCCGCT CGACTACGTC GCCCAACACG TCCATCTCGG CTACGCGACG
ACGGTCCACG GCGCGCAGGG CATGACGGCC GACACCGCAC ACCTCGTCGC GGCGGGCGAG
GAGACGAGGC AGACGCTGTA CGTCGGCATC TCCCGCGGCC GCCAGGCGAA CCACATCTAC
CTCGACACCG GGTACGACGG GGACCCACAC AGCCTCATCG ACCCGAAGGC ACTCCGTCCA
CCCACGGCGA TCGACATTCT CGCCGAGATC CTTGAACGCG ACGGCTCCGA CCGCTCCGCC
ACGACCACGC AGCGCGAGGC ATCGGCGTAC ACGACCCAGT TCCACGACGC CGTCATGCGC
TACCACGACG CCCTCGGCTA CGCCGCCGAG GACGTGCTCG GCGCCGACTC GCTGGCGAGC
ACGAACCGGG AGGTCGAGGC GATCTGGCCG GGGCTCACCA GCGAACCGGC GTACCCGACA
TTGCGTGGGC ACCTTGCCCT GCGAACCGTC GACGGAGCAG ACCCCGTCGC CACGCTGCTC
GACGCCGCCA ACGAGCGCGA GCTCGGCACC TCCGACGACC GTGCGGCCGT CCTCGACTGG
CGGCTCGGCA AGGCTGCGGC CGGCCCCCTG CCATGGCTCG ACGGCGTGCC AGAACGGCTC
GCCGACCACG CGACCTGGGG TCCCTACCTC CGCAGTCGCT TCGAACGGAT CACGACCCTC
GCTGGCGCTG TCCGGGGTGA AGCCGAGGCG TGGACCCCGA CAGCAACGCC TCCGTGGGCC
TCAGGACTCA CCGCAGCCGA GCACTCGGCA CTGCGCGGCG ACCTCTCGGT CTGGCGCGCA
GCGTTCGACG TCCCCGAGGA CCACGCCCGT GCCACCGGCC CCGTGCAGCC GGGGGCGTCG
ACTGCGCCCC ACCAGCAGGA CCTCGAACGC CGGGTGCGCT CGGTGCTGGG CGTCCACCGC
GCCGACGACG AACTTCTCGA ACTCATGCCA GAGGAAGTCC GGACGGACGC CGAATTCGGC
CGCCTCTCGG AGCGACTCGG GGCACTGCAG GCGGCACACG TCGATGTCGG CCCACTGATG
GACCGAGCCC TCAACACGGT CCACCCGCTT CCCGACGAGC GCACGGCCGA CGCTCTCTGG
TGGCGAATCG TGCGTCATCT CGGCCCTGCC GCCCTGCGCG CGTCGGCCAA CCAGGCTCAC
ACGCTCCGAC CCAGCTGGAC CTCACACCTC AGTGAGCGAC TCGGTGAGGC GACCTGTGAG
CGAGTCATGG CCGACGCGAT GTGGCCGGCC CTGGTCGCGG CCATCCACGC GCGCCCCGCC
GAGTGGACTG CCGAGCAACT GATCGATGCC GCGACCTCGG GCCACGGTCC CGACGTACGG
CCTGAGGAAC TGTGCTCGGC GCTGGTGTGG CGCATCGCCA CCATGACGGA CGCACCGTTC
GCCGAGCCGG AGCCGCCCGA GCCCGACTTC TCTCAGCCGG AGCCGACACC GGTTGCGCCG
ATCCCGGCAA TGAACGAGCC CGGGGCGCCC GCCGAGCGGA TCATCGAGCT GAACCACTGG
GCGCTCGACC ACTACTCAGC CATGTACCCC AAGTCGTGGG CACCCGACTA CCTCCGCGAC
CGCCTTGGAA ACGACCTCAC GGACGACCCG CGCTACCAGG TCGGGTACGC CCCGCCCGGG
CCGACCAGCC TGATCCAGCA CCTGGCTACG CGGGGCACCA GCGAGGAAGA ACTACTCGAC
GCCGGACTCG CACGGCGAAC AGAGCGCGGG CACCTGGTCG ACGCCTTCCG CGACCGGCTG
GTCTTCCCGA TCTACTCCGG CAGCGATCTC GTGGGCTTCA TCGGCCGCCG CAACCCGACC
AAGCCGGACG GCGAGTTCTC CGGCCCGAAG TACCTGAACA CCCGGAGCAC CGCGGTGTTC
GCCAAGGGCG AGGCACTCTT CGGCCTGACC GAGGCCACCG CTGACCTGGA CGCGGGCTCG
ACGCCGGTAC TCGTCGAGGG CCCCATGGAC GCCATCGCCG TGACCCTGGC CTCGGGCGGC
GAGTACGTCG GCATCGCGCC GCTCGGCACG GCCTTCACCG AGACCCAGGC CGCCACGCTG
AAGCCGCATC TACGTGAGGC GCCGAGCAAC ATCGTGATCG CAACCGACCC CGACTCGGCT
GGATGGCAGT CGGCCCAGCG AGCGTTCTGG CGTCTCGCGG CTCTTCGCGC AGCGCCTCGA
CATCTCACTC TTCCGGAAGG TGTCGACCCT GCCGATGCTC TGCGCAAGCA CGGCAAGGCC
GCCCTCCGGA CGGGACTCGC CGATTCGCGG GACTTCGCCC TGGTGCTCGT CGATCGCGTA
CTCGACGATC GCTTGGCGAC CCACGACGAC GCCTTCGCAC GGGTGGACCA CTGCCGAGAG
GCAGCCCGCA CCATCGGAAC GCTGGCACCC GACCGCTGGC TGGCGTACGC CCAGCACGCA
TCGGAACGGC TCGACCTTCC GCTACAGGCG GTCATCGATG AAGTTCTCGA AGCCGGTGCG
GAGTGGACAG ACGACCCTCG GGCCTGTGCT TCTCGCGAAC TTGCTCGACT CGGGGTCTCC
GCGGCCGCGC CGAAGGCTAC CCATCGCGAA CGCGTGATGG AGCCGCCCGC AGCGACGTCC
GAGCACTGTC CCATTCACCT CTCGCGTCCC CCAAGTCCCG CCGTCGAGCG GTGA
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| Protein sequence | MIGGPFCARG NCPFARHRAL EGVVMSLRKL TAGDGYSYLT RQVAAHDTTE KGHTSLADYY
DEKGESPGRW MGSGLTGLGM NSGQGVTAQQ MKALYGLGIH PDAANIEERL AEQGASRAEV
EAAIALGKRF PIHDTASTFN VRVAEAFTAY NAQHRQKWNA PIRPEERARI RTQIGTAMFV
EGHGREPQDA RELSGFIAKA SRQPTSAVAG FDLTFSPVKS VSALWALAPK EVAADIRAAH
DAAVVDTLTW LEREVAHTRV GSGGVRQVKV RGLVAAAFTH RDSRAGDPDL HTHVAVSNKV
QAEDGHWLAL DGRLLYAAKV TASEHYNTRV EAELVARLGV EFADRDDTVG GKVPVREIRG
VSTTLTRWWS RRRVAIEARQ AEIAAEFQGR FGRPPTAIEA KSLADQATLE TRDAKHGRRS
EREQRDEWRA EADDVLGDPA EVDEMYSRAV GRRNGGRTAT RDWVEDVAAA TIAFVEESRA
TWNVWHLLAE AQRQARRAGI ARDDVDRAVD QVVDAAISRS VRLGVDDPIS EPPPLQRPDG
ASVYDVHGAT LYTSAKVLLA EEEILNLAGR TGGHALADVR VEVAIAGAAA NGFELNDAQA
AMARDLATSG AVVQLALAPA GTGKTTTMSV LADAWAAGGG QVIGLAPSAQ AAHELGQAVS
GYTDTLAKLT WTLANEPSVA WPRWIRDIGP QSLVIVDEAG QAATTELAAA VRFVAERGGA
VRLIGDDQQL AAVGAGGVLR DIQQQYGAST LSEVRRFDDP AEAAATLAVR EGDAAALGFY
ADNARIHVGD LSAVADQAYD SWASDRAAGL DSVLLAPTRE LVCQLNARAR ADRLTATATV
GPEVDLADGN RGSVGDVIVT RRNSRRLVVS RSNWVKNGDR WRIEKVLGDG GLLARHLELG
RTVELPLDYV AQHVHLGYAT TVHGAQGMTA DTAHLVAAGE ETRQTLYVGI SRGRQANHIY
LDTGYDGDPH SLIDPKALRP PTAIDILAEI LERDGSDRSA TTTQREASAY TTQFHDAVMR
YHDALGYAAE DVLGADSLAS TNREVEAIWP GLTSEPAYPT LRGHLALRTV DGADPVATLL
DAANERELGT SDDRAAVLDW RLGKAAAGPL PWLDGVPERL ADHATWGPYL RSRFERITTL
AGAVRGEAEA WTPTATPPWA SGLTAAEHSA LRGDLSVWRA AFDVPEDHAR ATGPVQPGAS
TAPHQQDLER RVRSVLGVHR ADDELLELMP EEVRTDAEFG RLSERLGALQ AAHVDVGPLM
DRALNTVHPL PDERTADALW WRIVRHLGPA ALRASANQAH TLRPSWTSHL SERLGEATCE
RVMADAMWPA LVAAIHARPA EWTAEQLIDA ATSGHGPDVR PEELCSALVW RIATMTDAPF
AEPEPPEPDF SQPEPTPVAP IPAMNEPGAP AERIIELNHW ALDHYSAMYP KSWAPDYLRD
RLGNDLTDDP RYQVGYAPPG PTSLIQHLAT RGTSEEELLD AGLARRTERG HLVDAFRDRL
VFPIYSGSDL VGFIGRRNPT KPDGEFSGPK YLNTRSTAVF AKGEALFGLT EATADLDAGS
TPVLVEGPMD AIAVTLASGG EYVGIAPLGT AFTETQAATL KPHLREAPSN IVIATDPDSA
GWQSAQRAFW RLAALRAAPR HLTLPEGVDP ADALRKHGKA ALRTGLADSR DFALVLVDRV
LDDRLATHDD AFARVDHCRE AARTIGTLAP DRWLAYAQHA SERLDLPLQA VIDEVLEAGA
EWTDDPRACA SRELARLGVS AAAPKATHRE RVMEPPAATS EHCPIHLSRP PSPAVER
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