| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0364 |
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| Symbol | |
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| ID | 4597750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 389438 |
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| End bp | 390601 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 78% |
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| IMG OID | 639774978 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_921594 |
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| Protein GI | 119714629 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000591318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGG TGGCCGCGGT CCCGCTCGCC GACCTCGAGG CGGTCCGGGA CCGCTTGGCC
CGCAGTCCGG GGGACCTCAC CCCGCACCGG GTGGCGCAGG CGCTGCGCGA GAGCGGCCGT
CCGGTGGGCG ACGCCGCGGT GCTGGCGACG TACGAGGCGC TGCGCCGCGA CGTCGTGGGC
GCCGGCCCGC TCGAGCCGCT GCTGCGCACG CCGTACGTCA CCGACGTGCT GGTCAACGGG
GCCGACCACG TCTACCTCGA CCGCGGCTCG GGCCTCGAGC TCACCGACGT CCGGTTCCCC
GACGAGGAGG CGGTGCGGCG GCTCGCCCAG CGACTCGCGG CGCTCGGCGG TCGCCGGCTC
GACGATGCCA CGCCGTACGT CGACCTCCGC CTGCCGGACG GCACCCGCCT GCACGCCGTG
CTCGCCCCGC TCGCCCGGCC GGGGACGCTG GTCTCGCTGC GGGTGCCGCG GCCGCGGACC
TTCACCCTCG ACGAGCTGGT CGGCCTCGGC ACGCTCACCG CCGGCACCGC CCGCCTGCTG
CGCGCGATCG TCGAGGCGCG GCTGGCGTTC CTCGTCAGCG GCGGCACCGG CTCCGGCAAG
ACCGCCCTGC TGGCGGCGCT GCTCTCCCGG GTCGAGCCGG AGGAGCGGAT CGTGCTGGTC
GAGGACGCCA GCGAGCTGCG CCCGGACCAC CCGCACGTGG TCGCCCTCGA AGGACGGCCC
GCGAACCTCG AGGGCGCCGG CGCGGTGGAG GTCCGCACCT TGGTGCGCCA GGCGCTGCGG
ATGCGGCCCG ACCGGCTGGT GGTCGGTGAG GTGCGGGGTG GTGAGGTGGT CGACCTGCTC
GCTGCCCTCA ACACCGGGCA CGAGGGCGGG TGCGGCACCC TCCACGCCAA CTCCGCGGTC
GACGTCCCGG CCCGGGTCGA GGCGCTCGCA CTCGCGGCCG GCCTGGGCCG GGAGGCGGCG
CACAGCCAGC TGGCGTCCGC GGTCCACGTC GTGCTCCACC TCGCTCGGGG CCCGGACGGG
GTGCGCCGGC TGCGCCAGAT CGCCGTCCCC CGGCGCGGCC CGGACGGGCT CGTCTCGATG
GTGCCCGCCC TCGAGGTCGG CGACGACGGG ATCGTCCGGC CGGGGCCGGG GGCCGACGAG
CTCGCGGCCC GGATCGGCCG ATGA
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| Protein sequence | MSEVAAVPLA DLEAVRDRLA RSPGDLTPHR VAQALRESGR PVGDAAVLAT YEALRRDVVG
AGPLEPLLRT PYVTDVLVNG ADHVYLDRGS GLELTDVRFP DEEAVRRLAQ RLAALGGRRL
DDATPYVDLR LPDGTRLHAV LAPLARPGTL VSLRVPRPRT FTLDELVGLG TLTAGTARLL
RAIVEARLAF LVSGGTGSGK TALLAALLSR VEPEERIVLV EDASELRPDH PHVVALEGRP
ANLEGAGAVE VRTLVRQALR MRPDRLVVGE VRGGEVVDLL AALNTGHEGG CGTLHANSAV
DVPARVEALA LAAGLGREAA HSQLASAVHV VLHLARGPDG VRRLRQIAVP RRGPDGLVSM
VPALEVGDDG IVRPGPGADE LAARIGR
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