| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1828 |
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| Symbol | |
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| ID | 3705268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 2076393 |
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| End bp | 2077613 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637738309 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_343826 |
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| Protein GI | 77165301 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAAAT CTTTTTTCCA TGCTGGGGTT GTTGCCGCCA TTTTTCTTGG TTTAAATGGT
TGCAATGATC CCACTCCCCA ACTTTCGGAA CCGCCGCCGC CAGAGGTCAC GGTTGCCCAC
CCTATCCAAC GGGAGATCGT CGAATGGGAC TACTATACAG GGCGTACCGA AGCGGCTAAG
ACCGTAGAAA TCCGCGCTCG GGTCAGTGGT TATCTTGATG AAATTGCTTT TGAGCCAGGC
AAGATTGTTG AGAAAGGGGA TTTGCTGTTC GTCATTGATC AACGTCCTTA CCAGGCGGTG
CTGGCCCAGG CCCGGGCGGG TTTGAAGCGG GCCCGGGCCC AGCTTACTTT GGCGATAACG
GAACTTGAGC GCGCCGAGCA GTTGGTGGGA AGAAAACTGA TTGCCCGTGA GGAATACGAT
CAACGGCTTG CCGAGCGGCA GGTTGCCCAA GCAGAAGTCA TGGAAATGCA GGCTGCCGTT
GAATCTGCTC GCCTTGATCT TAACTTTACC GAGATCAGGG CGCCCATAGG GGGGCGTATT
AGCCGGCAGT TGGTGGATGG GGGCAACTTG ATTATCGGGG GAGGCGAGGG TAATGCTACT
TTGCTCGCCA TCTTGGTTTC CATTGATCCC ATTTATGTTT ATATCGATGC CGATGAACGG
GCAGTGCTTA AGTATAGGCG CTTGCACCAA GAAGGTAGTC GGGTGAGTGC ACGCTATGCG
CGAATTCTAG CCCAAGTGGG CCTTGCGACA GACAAAGACT TTCCTTTTCA AGGGATTATC
GACTATGTTG CGCCCCGGGC AAACCCCTCT ACCGGCACTG TACGCGCTCG GATTGTCATC
CCTAATCCGG ATGATCAGTT AAGCGGTGGT TTTTTCGCCC GGGTGCGAAT ACCTGGAAGT
GGCCGCTATC GGGCCACATT GATTACGGAT CGGGCGATTA GTCAGGACCA GGGGCAAAAA
TTCGTTTATG TGGTAAACGA TGAGAATAAG GTCGCCTACC GCCGGGTTGA GTTGGGTCCT
ATCGTGGATG GTTTGCGCAT TGTTCGTGCT GGTCTGGAGC CGGAGGAGCG GATCATTATC
AAAGGCGTCC AACGGGCCCG GGAAGGTATC GAAGTTAGCC CCCAGTTGGC ACCCATGACG
GCCCCGGAGG CTTCTACCCA AACCAGCGCT AAGCCACTTA TTTTGGAGGC TGGCAAAGAA
TTTTCTCCCG GCCAAGGTTA A
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| Protein sequence | MIKSFFHAGV VAAIFLGLNG CNDPTPQLSE PPPPEVTVAH PIQREIVEWD YYTGRTEAAK
TVEIRARVSG YLDEIAFEPG KIVEKGDLLF VIDQRPYQAV LAQARAGLKR ARAQLTLAIT
ELERAEQLVG RKLIAREEYD QRLAERQVAQ AEVMEMQAAV ESARLDLNFT EIRAPIGGRI
SRQLVDGGNL IIGGGEGNAT LLAILVSIDP IYVYIDADER AVLKYRRLHQ EGSRVSARYA
RILAQVGLAT DKDFPFQGII DYVAPRANPS TGTVRARIVI PNPDDQLSGG FFARVRIPGS
GRYRATLITD RAISQDQGQK FVYVVNDENK VAYRRVELGP IVDGLRIVRA GLEPEERIII
KGVQRAREGI EVSPQLAPMT APEASTQTSA KPLILEAGKE FSPGQG
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