Gene Noc_0597 details

Gene Information

• Locus tag: Noc_0597
• ID: 3706829
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 643104
• End bp: 643763
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637737105
• Product: Sel1 repeat-containing protein
• Protein accession: YP_342646
• Protein GI: 77164121
• COG category: [R] General function prediction only
• COG ID: [COG0790] FOG: TPR repeat, SEL1 subfamily

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGTATC ATTCTTTATC TACGTGGAAT TTAGCTGTAC CGGAGATGGA AAAAATAAGC 
ATTCGAAAGT TAGGCATGAG GCTCTTATGC GGATTGATAT TTTGCGCGAT GCTGATAGCC 
TGTACCCAGG CTCCCCCCGC TGCAATGATA CGTGTTTGTG ATTCTAAGGG TTGCTCCTAT 
CGTCCTAGTG ATTCCGCTAC CTACGATCCC TCTGCCACGG TACCCGATGA AGACCCAGAG 
GGGCGTATTG CAGCCCTGGA AGCACTTGCG CAACAAGATC CCCAGGCTGC ATACGATCTA 
GGGCTGCGGT TTTTCCGTGG CGACGGGGTG CCGCAAGATA GCTACCGTGC ACTCCAATGG 
ATGCGCAGCG CGGCGGAAAG GGGCAATCTC GATGCTCAAG TGGCCTTGGG ACAGCTCTAT 
TTAACGGGTC TTGAAGAGTT AGGCCCGGAT CCCCGCGAGG CCGAAAAATG GCTGACTATC 
GCGGCGGGTC GTGGTAATGA AGAGGCGCAA ACGCTTTTGG CGGAGGCAAG AGAGGCCCGG 
CAGGCGGAAG ATGCCTATTT CAAATGGCGT AACCGCTGGC GGCCACTATT CTACCGCCGT 
TGGTATTACA ATTACCCTTA CCGGTTCTAT TGGCGGAGGG GTGGTTGGCA CCATTATTAA 

 

Protein sequence

MTYHSLSTWN LAVPEMEKIS IRKLGMRLLC GLIFCAMLIA CTQAPPAAMI RVCDSKGCSY 
RPSDSATYDP SATVPDEDPE GRIAALEALA QQDPQAAYDL GLRFFRGDGV PQDSYRALQW 
MRSAAERGNL DAQVALGQLY LTGLEELGPD PREAEKWLTI AAGRGNEEAQ TLLAEAREAR 
QAEDAYFKWR NRWRPLFYRR WYYNYPYRFY WRRGGWHHY