| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1391 |
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| Symbol | |
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| ID | 5774546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 1273832 |
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| End bp | 1275244 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641317037 |
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| Product | Pre-mRNA processing ribonucleoprotein |
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| Protein accession | YP_001582725 |
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| Protein GI | 161528899 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTCTG TGATTTTAAC AGAATTGGGA ATCTCAGTTT TTGATGATGA AAAACTAGAA
AAATCATTTT CATTTTCAAA TCCTGTAAAA GAGTATCTCT CAATAAAAAA TAAAGAATCA
AAATTAAACG AGGTTATCAA TTATTTGGCT TCAATTCAAA GAGGAGTCTC AGTAAGTGAT
GATTCACTAC TTGCTATTTT GAAAAAAAAT AATATAGATT CTCAAATTAT GGAAGATTCA
GAATTAGAGA GAATTCAAGC ATCAAAACCA CAAATCATTG TTGATTCAGG TTTTGCATCA
AATCCTCAAG ATGCTTTAGG AAAGTTAAGA GAATTTGCTT TAGGATTATC ATCTTCAAAG
GTTACTGAAG TTTCTGAAAG TCCAGATCTT CATATCATTC AAGCAATCAA TTCACTAGAT
GAAATTGACA AAATTGCAAA TGCTCTTAGT TCAAGATTAA GAGAATGGTA TGGATTACAT
TTTCCAGAAT TAGATAACAT CATTGATAGT ATTAATGGAT ATGCACAAAT TGTTATGGCA
GGAAAACGAG AGTCGCTAAC AAAACAAGTT TTTGAAGATG CAGGTTTTCC AGAATCAAAA
GTAGAGATGT TGTCTTTAAT TTCTACAAAA AGCAGAGGGG GAGATATCTC TGATGTAAAT
CTTGCAATTG TTCAATCAAT TGCAAAACAA ATTTTAGATT TTCATGATTT GCGTAAAAAA
CTTGAAGAAC ATGTTGAATC AGAAATGGAA ACTATTGCAC CAAATCTTTC TGCAATACTT
GGTACAACAG TAGGTGCTAG AATTTTAGGA AGAGCTGGCA GTCTTAAGAG ATTAGCTTCA
CTTCCAGCAA GCACAATTCA AGTTCTTGGA GCAGAAAAAG CATTGTTTAG ATCATTGAAA
ACTGGTTCTC AACCACCAAA ACACGGACTA TTATTCCAAC ATGCAATGGT TCATGCTGCA
CCTAGATGGC AAAGAGGAAA AATTGCACGT GCCATTGCTG CAAAAGCAGT CATTGCTGCT
AGAGTTGACG TCTACGGAGA GGGCCTAAAC AGTACACTAC TTGAGAAACT CAATGTCAGG
GTTGATGAAA TTGGAAAGAA ATACGAAAAC CCAACTGAAA AAGATACCAG AAGACCAGAA
TCATTTAGAC GAGATGGAGG CAATTTCAGA GATAATCGCA GACGTAGAGA TGACAGAGGC
GGACGTAGAG ATGACAGAGG CGGACGTAGA GATGACAGAG GCGGACGTAG AGATGACAGA
GGCGGACGTA GAGATGACAG AGGCGGACGT AGAGATGACA GAGGCGGACG TAGAGATGAC
AGAGGCGGAC GTAGAGATGA CAGAGGCGGA CGTAGAGATG ACAGACCAAG TTCAAATAAA
AATAAAAAGA GAAAACAGTT TGGAAGAAGA TAA
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| Protein sequence | MYSVILTELG ISVFDDEKLE KSFSFSNPVK EYLSIKNKES KLNEVINYLA SIQRGVSVSD
DSLLAILKKN NIDSQIMEDS ELERIQASKP QIIVDSGFAS NPQDALGKLR EFALGLSSSK
VTEVSESPDL HIIQAINSLD EIDKIANALS SRLREWYGLH FPELDNIIDS INGYAQIVMA
GKRESLTKQV FEDAGFPESK VEMLSLISTK SRGGDISDVN LAIVQSIAKQ ILDFHDLRKK
LEEHVESEME TIAPNLSAIL GTTVGARILG RAGSLKRLAS LPASTIQVLG AEKALFRSLK
TGSQPPKHGL LFQHAMVHAA PRWQRGKIAR AIAAKAVIAA RVDVYGEGLN STLLEKLNVR
VDEIGKKYEN PTEKDTRRPE SFRRDGGNFR DNRRRRDDRG GRRDDRGGRR DDRGGRRDDR
GGRRDDRGGR RDDRGGRRDD RGGRRDDRGG RRDDRPSSNK NKKRKQFGRR
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