| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1324 |
|---|
| Symbol | |
|---|
| ID | 5774146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 1213048 |
|---|
| End bp | 1214319 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641316969 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001582658 |
|---|
| Protein GI | 161528832 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000000102488 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGG TCAATAATCA GATCGAGCAA GAATTGTCAT TTGAGAACAT TTCACTAATC
AAAAAATATG ACAGGGAGAT GGTATCACAA TCAATTGCCA TTGCAACACG TCAAAAGCAT
CTAAGAACAT TGCTAACACT ATCAAAATTG CTAAAGAAAA ACTGGAAGGA TGTGACCAGG
GATGATATTG ATGACTTGGT ATTTCTGATA ATGGACCAGT TTGCAGATGA AAGTGGTCAG
GAAACACATT ACTCTTATGA TCACAAAAAG ATTCTCAAGA TTTTCTTTAG ATGGTACAAG
CTTGGCTCTA GAGAATTTGT TCAAGTTGGA GATCCACCTG AGACAAAAAA TGTCAAGATG
AAAAAAGTCA AAGACAAGAT TGCACGTGAA GACCTCCTAA ATGAAGAAGA CAGAATAAAG
ATACTGTATG CATGTGGCGA GAATGCAAGA GACAGAGCTC TAATTGATTG TCATATGGAA
GCTGGAACCA GACCAGGTGA GATTCTAAAT TTGAAGTTAA AACATGTAAA GTTTGACAAG
CATGGTTGTG TACTTCAAGT GGACGGAAAG ACAGGAGCTA GAACAATTAG AATCGTAAGG
GCTACTCCAA ACTTGGCTGC ATGGATTGCA GTACATCCAT ACAAAGATGA ACCTGAAATG
CCATTATGGC CAAATATTAG CCATCATAAG AAAGGCAGTC CAATTACATA TGCTGCAGCA
AGACAGATCT TACATAGAAG ATGCAAGATT GCAAATATCT CAAAACGTGT TTATCTGAAT
TTATTTAGAC ATAGTGAGGC CACAACTACA GCAAACTTCA TGACTGAAGC TCAGATGAGA
AAAAGACATG GATGGTCGTC TGACTCTAAA ATGCCTGCAA GATATGTCCA CTTGGTAAAT
TCTGATGTGG AAGATGCAAT CTTCAAGCAC TATGGAATCA AAAAAGAAGA TGAAAAGATG
CCAGAAATGC CTGTAAAGTG TCATTTTTGT GAAATGTACA ATCCATCAGA CAGCGTAACA
TGTACAAAAT GTGGAAAACC ATTGAATCTT GAGAGTGCAA TAAAAAGAGA AGAGCAAGAA
AATGCTGAAA AGAAAAAACT TGAAGAAAAG ATCAAGATGC TAGAGCAAAG ACAGATTGAA
TCAGAAAAGA ATCAGAAAGG ATATTCAGAT TTAAAATCAA TTGTAGATGA ATATTTGAAA
GAATACTTTG AGGACGTATT TGACAAGATA GAGTTTGTAA AGAATCAAAA ACAAAATAGT
ATTACAAACT GA
|
|---|
| Protein sequence | MKQVNNQIEQ ELSFENISLI KKYDREMVSQ SIAIATRQKH LRTLLTLSKL LKKNWKDVTR
DDIDDLVFLI MDQFADESGQ ETHYSYDHKK ILKIFFRWYK LGSREFVQVG DPPETKNVKM
KKVKDKIARE DLLNEEDRIK ILYACGENAR DRALIDCHME AGTRPGEILN LKLKHVKFDK
HGCVLQVDGK TGARTIRIVR ATPNLAAWIA VHPYKDEPEM PLWPNISHHK KGSPITYAAA
RQILHRRCKI ANISKRVYLN LFRHSEATTT ANFMTEAQMR KRHGWSSDSK MPARYVHLVN
SDVEDAIFKH YGIKKEDEKM PEMPVKCHFC EMYNPSDSVT CTKCGKPLNL ESAIKREEQE
NAEKKKLEEK IKMLEQRQIE SEKNQKGYSD LKSIVDEYLK EYFEDVFDKI EFVKNQKQNS
ITN
|
|---|
| |