| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1135 |
|---|
| Symbol | |
|---|
| ID | 5773777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | - |
|---|
| Start bp | 1038395 |
|---|
| End bp | 1040071 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641316778 |
|---|
| Product | spermine synthase |
|---|
| Protein accession | YP_001582469 |
|---|
| Protein GI | 161528643 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0187668 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCTC TGTCTTATTC AAAACTATCT CAGGAAATGT TGTGGAAACT CAAAGTTCTC
ACATTTTCTT CTGGCGCTAT TGTTATGGCC TTGGAAATTG CGACAAGCAG AATTCTTACT
CCTGTATTTG GAAGCACAAT TTACACTTGG GGAAGCCTGA TTGGCGTAAT CCTAAGCGGT
TTGAGTCTTG GTTATTTTTT GGGAGGTCGC ATAGCAGACA AACATCCGAA ATTTGACAAG
ATTTGTGGAA TTGTTTTTTC AGTAGGGCTC TTTATCGTGG GCATGCCATT TTTTGCATCA
CATGTCGTAG ACTTTTCTCT TGCAATCATG CCCATTTCCC AATACACTCC ATTGCTTGCA
ACTTTTTTGC TGTTGATGCT TCCGTCTGTC TTGCTTGGAT TTGTCTCTCC TTATGTAATC
AAGCTTGGCA CAAAATCCTT GCAAAAAGTT GGAAATATGT CTGGCAATCT TTATTCTATT
GCAACTGTAG GAAGTATTTT TGGAACATTT GTTACTGTTT TTGTTTTAAT TCCTAATGTA
ACAGTACACC AGATAATTTT TGGATTAGGA ATTGCATTAA TTGCCAGTTC CCTAATTGGC
CTTAAAATAT CTCCAAAGAT TATTGCAATT GGCATTGTTA TAATTTTGAT TGTTCCGTGG
TCTTCTTTTT CTGTAAGTAC AATATCTCAC AATGGAATGC TAATTTTTGA AAAAGAAACT
ATGTTTAGCC ATTTGGATAT TATAGAATAC GGCGATAATC GAAGTTTGTA TCTTGATGGA
TTGCGGCACA GCTCTATGAA CATGCGTGAT CCGCTAGATT TGGTGATAGA TTATACTGAG
TACTTTCATT TGGGGATGAT GTTTAATCCT GCAGCTAAAG ATATTTTGTT TGTAGGTGGA
GGGGGATTTT CAGGACCAAA AAACTTTCTG GCATTATATC CTGACACAAA AATTGATGTA
ATTGAAATTG ATTCTGATGT AATTGATGTT GCCAAGACCT ACTTTAATCT AGAAACAAAT
CCCCGGCTGC AGATATTCAA TGATGATGCA AGAAAACATC TCTCAATGTT TGACAAGAAA
TATGATCTTA TAATCCTGGA TGCATATGCT ACAAATTATG TTCCTTATCA TTTGATGACT
CATGAGTTTT TTCAATTACT TGAAAAAAGA CTTGAGCCAA ATGGCATTGT TGTATCCAAT
CTAATCGGCT CAATTGAAGG AAATAACTCC CCTTTGGTAC GTTCTGTATA CAAAACAATG
AAAGAGACAT TCCCAGTATC CTATGTTTTT CCAACTGAAG AAAAACCCAC ATTCATTCAA
AATATCATGA TAGTTTCATC AAATCAGCCT TACGAGTTTG ACAGATTGTT GCTTTTGGAA
CTCTCAAAAA ACAGTCCTGT GGATTATTTG AGTGATGAAT TAAGCAGACA AGAGCACTTC
TATACTGGAA TAATCGCGAC AACTGATGTT CCATTTTTGA CTGATCAATA CAATCCTTCG
GAAGTTTTGA TTAACCCTAT TACAAAAAAT CCATACCTTC AGGATCTTCC AGAAAACCAA
ATTGATGAAA AACAACATCT TGAATATTCT ATGAACTTGA TATTGGGAAT TATATTGATT
ATTATTGCTG GAATGTGGTT GTTCTATTTC AAAAAACGAA TATGGAATTT TAATTAA
|
|---|
| Protein sequence | MSSLSYSKLS QEMLWKLKVL TFSSGAIVMA LEIATSRILT PVFGSTIYTW GSLIGVILSG
LSLGYFLGGR IADKHPKFDK ICGIVFSVGL FIVGMPFFAS HVVDFSLAIM PISQYTPLLA
TFLLLMLPSV LLGFVSPYVI KLGTKSLQKV GNMSGNLYSI ATVGSIFGTF VTVFVLIPNV
TVHQIIFGLG IALIASSLIG LKISPKIIAI GIVIILIVPW SSFSVSTISH NGMLIFEKET
MFSHLDIIEY GDNRSLYLDG LRHSSMNMRD PLDLVIDYTE YFHLGMMFNP AAKDILFVGG
GGFSGPKNFL ALYPDTKIDV IEIDSDVIDV AKTYFNLETN PRLQIFNDDA RKHLSMFDKK
YDLIILDAYA TNYVPYHLMT HEFFQLLEKR LEPNGIVVSN LIGSIEGNNS PLVRSVYKTM
KETFPVSYVF PTEEKPTFIQ NIMIVSSNQP YEFDRLLLLE LSKNSPVDYL SDELSRQEHF
YTGIIATTDV PFLTDQYNPS EVLINPITKN PYLQDLPENQ IDEKQHLEYS MNLILGIILI
IIAGMWLFYF KKRIWNFN
|
|---|
| |