| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_1008 |
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| Symbol | |
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| ID | 5774270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | - |
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| Start bp | 882881 |
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| End bp | 885112 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 641316647 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001582342 |
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| Protein GI | 161528516 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
[COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTCTC AAATCCCAAC CAAATTAAAA TTAAATACAA TCAAAAAATA TTGTGAATAT
CTCATGAAAG TATCACTAAT CTATAATGAA AAGAAGATAG ATCCAAATGA TGTCATCAAT
GTTTTTGGAA TGACAACAAA AGAGCATTAC AGCTCAAAAG CTGTTGAAAG AGTTGCAAGA
GCATTAGAGA AAGGAGGTCA TTCTGTCAAA GTTATTGAAG GTGATATCCA TCTTGCTGAT
GAATTACGTG AGTTTATGCC CAAAGTAGTT TCAGGCGAAA AGCCAGGGAT GGTTTTCAAT
ATGGCATATG GAATTCAAGG GCAAAATAGG TACACACATG TTCCAGCCAT GATGGAGATG
CTTGGGATTC CTTACATTGG CTCTGGTCCT GCAGGTCATG CAATTGTACA AGATAAGGTG
ATGACCAAAA TTGTTCTTCA AAAAAATAAT ATCCCAACCC CTGGTTTTTG GGTATTCAAG
ACACCAGACG ATAAATTTGA TGATCTAGTT TTCCCCGTAA TTGTAAAACC AAAACTAGAA
TCAACTTCTA TGGGAATGGA AGTAGTTGAT AATTGGGATG ATTTGCGAAA TGCTGTCAAA
GTTCAGATTG AAAAATATCA ACAAGACATT CTAGTAGAAC AATTTATCTC TGGACGAGAG
TTTGCAGTAG GATTAATTGG GAACAGTCCA AACATTGAGG TTCTTCCAAT CGTTGAAATT
AATCTTGGAG ATCCTGACAA AATTCAAACA ATTTCAGATA AAAAGAAAAC AGGTGGTGTT
GATAAAACAT GTCCTGCAAA ATTATCCAAA GAAAAAACAG AATATATGAA AAAGATTTGC
ATTGATGCAT TCACAGCTTT GGGTCTTAAT GACTATACTA GAGTTGACTT TAGAATGGAT
AAAGATGAGA ATATCTACAT TCTAGAACTA AATTCCATGG CGAGTTTGGG AATGGGTGGT
TCTTTGTTTT ATGCCGCAAA AACAGCTGGA TACACTTACG AATCTTTAAT CAATAAAATT
TTAGACGTTG CAACCATGAG ATATTTTGGT TCGTCTCAAT TGCCTGAAAC TGAACATGAA
CCTGACCTTA CACAACCACT GCGGATTGTT GCACGCACTT ATCTGAGAAG TCACCTACAA
AACCAAAAAG ACACTTTGAA AGATTTTGTT AACTTGAATA CGCATGTACA TAACATCGAT
AATGTAAACA AATTAGGCAC AATGTTGTCT AGGAGGATGA AACACTTGGG CTTCTCTGAG
CATTTGCACA GGCAGTTTGA GATTGGAGAT TTTCATTATT TTAAGAACCA TGAGGATGAG
AAAAACGATG TTCTGATAAT ATCTCATATG GATACTCATT ATGGTCCAAA TGATTTAATC
TCGTATTTTG AAGATGATGA TAGGATTTAC GGTTCAGGAA TAGCTGAAAG TAAGGGCGGT
CTAACTGTAA TGCTGGGTGC ATTGCATGCT TTACGCTTTG CAAAACGTCT AAAGAAAATA
AAATGTGGTG TCTTGCTTAC AACCGATGAT AGTCTAGGCG GACGTTTTAG TAAAAAACTT
GTCCAACAAT ATTCTAAAAA ATCAAAGTAT GTTATAGGAT TAAAATCTGC AAGCAAAGAT
GGAGGTATAA TTACTACTTG TTATGGAAGA AATGACTATC AAATTCGATT CACCACTCCT
AATTCCACAT CCTCTGATAT TCATGGAATA ATTCCTATAC TTGGTAAAAA GATTACAGCA
ATTGAAAAAC TTTCAAAAGA TGAAAAAAAT TATCGTCTGA GAACAACATC TGTTATAGCT
CAAGGCACTC ATGGCCATGC GCCAAATTAT GCAACGTTAT CTATAGTTTG TAGTTTTAAA
ACTCCTGCAT TAGGTAAAAC AATGGATTCT AAAATTCGAA CTATTATGCA AAAAAAAGAA
TCCGGACAAA AAAATTTGGA AGTTGCAATT AATCAAATAC AAACAAGACC TCCAGTCATT
GAAGAAGAAT CTGATAAAAA ATTCTACGAG CAAGTAGAAG ATTTGGCTAA AAAACATGAA
TTAAAAATAA GACGCCATGA ACAGATAATG TCCTCAGATA TTAGTAATGT GCCTTCAAGA
TTGCCTGCAC TAGATGGGTT TGGTCCTGTT GGTCACAAAT ATCGCTCTAC ACAAGAATAC
ATACTTCATG ATAGCATCAC AGAACGTTCT GCTCTGCTTG CATCTGTGTT GTATAGGTGT
AGTGGAAATT GA
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| Protein sequence | MDSQIPTKLK LNTIKKYCEY LMKVSLIYNE KKIDPNDVIN VFGMTTKEHY SSKAVERVAR
ALEKGGHSVK VIEGDIHLAD ELREFMPKVV SGEKPGMVFN MAYGIQGQNR YTHVPAMMEM
LGIPYIGSGP AGHAIVQDKV MTKIVLQKNN IPTPGFWVFK TPDDKFDDLV FPVIVKPKLE
STSMGMEVVD NWDDLRNAVK VQIEKYQQDI LVEQFISGRE FAVGLIGNSP NIEVLPIVEI
NLGDPDKIQT ISDKKKTGGV DKTCPAKLSK EKTEYMKKIC IDAFTALGLN DYTRVDFRMD
KDENIYILEL NSMASLGMGG SLFYAAKTAG YTYESLINKI LDVATMRYFG SSQLPETEHE
PDLTQPLRIV ARTYLRSHLQ NQKDTLKDFV NLNTHVHNID NVNKLGTMLS RRMKHLGFSE
HLHRQFEIGD FHYFKNHEDE KNDVLIISHM DTHYGPNDLI SYFEDDDRIY GSGIAESKGG
LTVMLGALHA LRFAKRLKKI KCGVLLTTDD SLGGRFSKKL VQQYSKKSKY VIGLKSASKD
GGIITTCYGR NDYQIRFTTP NSTSSDIHGI IPILGKKITA IEKLSKDEKN YRLRTTSVIA
QGTHGHAPNY ATLSIVCSFK TPALGKTMDS KIRTIMQKKE SGQKNLEVAI NQIQTRPPVI
EEESDKKFYE QVEDLAKKHE LKIRRHEQIM SSDISNVPSR LPALDGFGPV GHKYRSTQEY
ILHDSITERS ALLASVLYRC SGN
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