Gene Nmar_0324 details

Gene Information

• Locus tag: Nmar_0324
• Symbol: rps4p
• ID: 5774482
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: -
• Start bp: 286452
• End bp: 287057
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641315952
• Product: 30S ribosomal protein S4P
• Protein accession: YP_001581658
• Protein GI: 161527832
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01018] ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 41
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGAGATC CAAAATATCC ACGTAGAGTT TGGAGAAAAC CAAAGAGACC TCTTAATTAT 
GAATTAAAAA TGGAAGAGTT GAAAACTCTA GGAACTTTTG GATTAAGAAC TAAAAGAGAA 
TTATGGAAAG CACATACAGA ACTATCCAGA GTCAGACATC AAGCAAGATC ATTACTTGCA 
TTAAGACAAG AAGTTAGAGC AGAAAAAGAA CCAATTCTAA TGAAATCATT AGCTAGAATA 
GGACTGGTTA GTTCAGATGC AACACTAGAT GATGTACTTA ACTTGACTGC AAATGATTTG 
CTTTCAAGAA GATTACAAAC TATTGTTACA AAGAAATTAG GATTCAAGAC ACCATACCAA 
GCAAGACAAG CAGTTATTCA CGGTCACATT ATGATTGGTG AGAGAAAAGT AGACATTCCT 
TCATACACAG TTACAGTAGA AGAAGAAAAC AGTATTCACT TTGCACCAGA ATCAAAGATT 
CCACAAGTTT TAGAAAAGAC AAAGAGTGAG GCTCCTGCTG AAGAGACAGT AGAGGCTCCT 
GCTGAAGAGA CAGTAGAGGC TCCTGCTGAA GAGAAAAAAG AAGAAAGTCC TTCAACAGAA 
TCATAG 

 

Protein sequence

MGDPKYPRRV WRKPKRPLNY ELKMEELKTL GTFGLRTKRE LWKAHTELSR VRHQARSLLA 
LRQEVRAEKE PILMKSLARI GLVSSDATLD DVLNLTANDL LSRRLQTIVT KKLGFKTPYQ 
ARQAVIHGHI MIGERKVDIP SYTVTVEEEN SIHFAPESKI PQVLEKTKSE APAEETVEAP 
AEETVEAPAE EKKEESPSTE S