| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4672 |
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| Symbol | |
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| ID | 4025822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | - |
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| Start bp | 118888 |
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| End bp | 120813 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637965150 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_572058 |
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| Protein GI | 92109772 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02767] Ti-type conjugative transfer system protien TraG |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.811781 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCAC GTAAGATCGC CCTCGCGATT GCGCCGGCCA TCCTCATGGC GGTGCTGTGC
CTCGCCACGA CCGGTGCGGA ATCGTGGCTG GCGCGGTTCG GAACGACGCC GGGCGGCCGG
ATGCTGCTCG GCCGGATCGG CCTCGCCCTG CCCTATGCAC TGCCGGCCGC AGCCGCCGTC
ATCTTCCTGT TCGCGGCGGC CGGCGCCAAC GCGATCCGCG CGGCGGGATG GGGTGTCGTG
ACCGGCGGCT GTCTCGTCGT CGTCATTGCC GCTTCGCGCG AGATCGCGCG CCTGCATTCC
TTCGCCGACG CCGTGCCGGC CGGAGAACGG CTTCTTGCCT ATGCCGATCC CTCGACCATC
GGCGGGGCGA CGATCGCGGC GCTCGTGGCC GCGTTCGGAT TGCGCGTGGC GATGCGCGGC
AATGCCGCGT TCGCGGCGGC CGCGCCACGC CGCATCCGGG GACGGCGCGC CATCCATGGC
GAATCCGACT GGATGGCGAT GACCGAGGCC GCGCGGCTGT TCGCCGAGGC CGGCGGCATC
GTGGTCGGCG AGCGCTATCG CGTCGATCAG GATGCGGTCG CCGACCGTGC CTTTCGCGCC
GACGAGGCGG ACACATGGGG AGCCGGCGGC AAATCCCCGC TACTCTGTTT CGATGCCTCC
TTCGGCTCGT CGCATGCCAT CGTCTTCGCG GGCTCCGGCG GCTTCAAGAC GACGTCTGTG
ACAGTGCCGA CCGCGCTCAA ATGGGGTGGC GGCCTGGTCG TCCTCGATCC GTCCAACGAA
GTCGCGCCGA TGGTCTTGAC GCATCGGCGG AACGCCGGCC GTCAGGCCTT CGTGCTCGAT
CCGCGGTCGC CAGAGGGCGG TTTCAACGTG CTCGACTGGG TCGGTCAGCA CGGTGCGACC
AAGGAGGAGG ACATTGCCGC CGTCGCGTCA TGGATCATGA CCGACAATCC GCGCCAGGGC
TCGGCACGGG ACGACTTCTT CCGCGCCTCG GCGCTGCAGC TGCTGACGGC GTTGGTCGCC
GACATCTGCC TGTCCGGCCA TACGGAAAAG AAGGACCAGC ATCTGCGCCA GGTCCGCGCC
AACCTCTCCG AGCCGGAGCC GAAGCTGCGG CAGCGGCTTC AGGCGATCTA CGACAACTCG
GCGTCCGGCT TCGTGAAGGA AAACGTCGCG CCGTTCATCG CCATGACGCC TGAGACGTTC
AGCGGCGTCT ACGCCAATGC GGCGAAGGAG ACGCACTGGC TCTCCTACGC CAACTATGCA
GCGCTGGTGT CGGGATCGAG CTTCACCACC GCCGAGCTCG CGGACGGGCA AACCGACATC
TTCATCAACC TCGACCTGAA GACGCTGGAG AACCATCCGG GCCTCGCCCG CGTCATCATC
GGCTCGCTGC TCAACGCCAT CTACAATCGC AATGGCGAGG TCAGCGGTCA CACCCTGTTC
CTGCTCGATG AGGTCGCCCG CCTCGGCTAT CTGCGCATCC TCGAGACTGC CCGCGACGCA
GGCCGCAAAT ACGGCATCAC CCTGTTGATG CTCTATCAGT CGATCGGCCA GATGCGGGAA
GCCTATGGCG GCCGCGACGC GACCAGCAAA TGGTTCGAGA GCGCGTCCTG GATCTCGTTC
TCGGCTATCA ACGATCCCGA GACGGCGGAC TACATCTCGA AGCGCTGCGG CGACACCACA
GTCGAGGCTG ATCAGCTCAG CCGGTCATCA CAAATGTCGG GCTCGTCGCG GACGCGATCG
AAACAGCTCG CCCGGCGCCC GCTGATCATG CCGCATGAGG TCCTGCGCAT GCGAACCGAC
GAGCAGATTG TGTTCACCGC CGGGAATCCG CCGCTGCGAT GCGGACGCGC GATCTGGTTC
CGGCGGCGCG ATATGAAAGC ATGTACCGGC CAGGACCCGT ACCATCGCAG CGAAGCCGTT
CGATGA
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| Protein sequence | MKARKIALAI APAILMAVLC LATTGAESWL ARFGTTPGGR MLLGRIGLAL PYALPAAAAV
IFLFAAAGAN AIRAAGWGVV TGGCLVVVIA ASREIARLHS FADAVPAGER LLAYADPSTI
GGATIAALVA AFGLRVAMRG NAAFAAAAPR RIRGRRAIHG ESDWMAMTEA ARLFAEAGGI
VVGERYRVDQ DAVADRAFRA DEADTWGAGG KSPLLCFDAS FGSSHAIVFA GSGGFKTTSV
TVPTALKWGG GLVVLDPSNE VAPMVLTHRR NAGRQAFVLD PRSPEGGFNV LDWVGQHGAT
KEEDIAAVAS WIMTDNPRQG SARDDFFRAS ALQLLTALVA DICLSGHTEK KDQHLRQVRA
NLSEPEPKLR QRLQAIYDNS ASGFVKENVA PFIAMTPETF SGVYANAAKE THWLSYANYA
ALVSGSSFTT AELADGQTDI FINLDLKTLE NHPGLARVII GSLLNAIYNR NGEVSGHTLF
LLDEVARLGY LRILETARDA GRKYGITLLM LYQSIGQMRE AYGGRDATSK WFESASWISF
SAINDPETAD YISKRCGDTT VEADQLSRSS QMSGSSRTRS KQLARRPLIM PHEVLRMRTD
EQIVFTAGNP PLRCGRAIWF RRRDMKACTG QDPYHRSEAV R
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