| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4566 |
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| Symbol | |
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| ID | 4025334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | - |
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| Start bp | 21435 |
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| End bp | 23888 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637965065 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_571973 |
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| Protein GI | 92109687 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCGCGC TGCGCTCCTT CCGACACCCC TCGCCGTCCT TCGCCGATCT CGTGCCTCAC
GCGGGTCTGG TCGCCAACGG CATCGTCCTG TTGAAGGACG GCTCGCTGAT GGCCGGCTGG
TATTTCGCGG GGCCGGACTC GGAGAGCTCG ACCGACGCCG AGCGCAACGA GGTCTCGCGC
CAGATCAACA CTATTCTTTC GCGTCTCGGA TCCGGCTGGA TGATCCAGGT CGAGGCGGTG
CGCGTGCCGA CCACGGATTA TCCGGCACGG CAGGATTGCC ATTTCCCAGA TCCAGTAACG
CGCGCGATCG ACGACGAACG CCGCGCCCGT TTTGAGGCGG AGAGGGGACA TTTCGAGAGT
CGGCACGCGA TCATCCTGAC CTGGCGGCCG CCGGAGCGGC GGCGCGCTGG TCTCGCGCGC
TACATCTACT CCGATGTCGA AAGCCGCTCG GCCTCCTATG CCGACACGGC GATCGAGACC
TTTCAGAACG CGATCCGTGA GATCGAGCAA TATCTCGCCA GCGTTCTGTC GATCCAGCGC
ATGGAAACGC GCGAGGTCGA CGAGCGGGAT GGCACGCGCG TCGCGCGCTA TGACGAGCTC
TTTCAGTTCA TCCGCTTCTG TATCACCGGC GAGAACCATC CGGTCCGCTT GCCGGATATC
CCGATGTATC TCGACTGGCT CGCGACCGCC GAACTTCAGC ACGGCCTGTC GCCCATGGTC
GAGAACCGCT TTCTCGGCGT GGTGGCGATC GACGGCTTTC CGGCCGAGAG CTGGCCGGGG
ATTCTCAACT CGCTCGATCT GATGCCGCTC ACCTATCGCT GGTCGTCGCG TTTCATGTTC
CTCGACGATC AGGATGCCCG CCAGAAGCTC GAGCGCACCC GCAAGAAGTG GCAGCAGAAG
GTACGGCCCT TCATTGACCA ACTGTTCCAG ACCCAAAGCC GATCGATCGA CCAGGATGCG
GCCGCGATGG TGGCGGAGAC GGAGGATGCC ATCGCCGAAG CCTCCTCGCA GCTCGTCGCC
TATGGCTATT ACACGCCGGT CATCGTGCTG TTCGACGACA ACAGCACGCG CCTGCAGGAG
AAGACGGAAG CCGTGCGCCG CCTGATCCAG GCGGAAGGTT TTGGCGCGCG CATCGAGACG
CTGAACGCGA CCGAAGCCTT CCTCGGCAGC CTGCCGGGTA ATTGGTACGC CAATATCCGC
GAGCCACTCA TCAACACGCG CAACCTCGCG GACCTCATCC CCCTCAACGC GGTGTGGTCG
GGCAGTCCGA CCGCGCCGTG CCCATTTTAT CCGCCAAACT CGCCGCCCTT GATGCAGGTC
GCGTCCGGCT CGACACCCTT CCGGATGAAC CTTCATGTCG ACGATGTCGG GCATACGCTG
GTGTTCGGCC CGACCGGCTC CGGTAAGTCA ACCTTGCTGG CGCTGATCGC GGCGCAGTTT
CGCCGTTACG CCGGCGCGCA GATCTTCGCT TTCGACAAGG GCCGCTCGAT GATGCCGCTG
ACGCTCGCCG CCGGCGGCGA CCATTACGAG ATTGGCGGCG ACGATGCGGA CGGCTCAGCC
GCACTCGCCT TTTGTCCCCT CTCCGATTTG TCGACGGACA CCGATCGCGC CTGGGCCTCA
GAATGGATCG AGACGCTCGT CGCCGTGCAG GGCGTGACGA TCACGCCCGA TCACCGCAAT
GCCATCTCGC GACAGATCGG GCTGATGGCC GAGGCGCGCG GGCGATCGCT GTCGGATTTT
GTCTCGGGCG TGCAGATGCG CGAGATCAAG GATGCGCTGC ATCATTACAC GGTCGACGGC
CCCATGGGCC AATTGCTCGA TGCGGAATCG GACGGGCTGG AGCTCGGATC ATTCCAGACC
TTCGAGATCG AGCAGTTGAT GAACATGGGC GAGCGCAACC TCGTCCCGGT TCTCACATAC
CTATTCCGCC GCATCGAAAA GCGGCTGACG GGCGCGCCGA GCCTGATCAT TCTCGATGAG
GCCTGGCTGA TGCTCGGCCA TCCGGTCTTC CGCGACAAGA TTCGGGAATG GCTGAAGGTG
CTGCGCAAAG CCAATTGCGC CGTGCTGCTC GCGACGCAGT CGATCTCCGA CGCCGAGCGC
TCCGGCATCA TCGACGTGCT GAAAGAAAGT TGCCCGACAA AAATTTGCCT GCCGAACGGC
GCCGCCCGGG AGCCCGGGAC GCGCAAGTTC TACGAGCGCA TCGGCTTCAA CGATAGACAG
ATCGAGATTG TCGCGACCGC AGTGCCCAAG CGCGAATACT ACGTGGCTTC GCCCGAGGGC
CGCCGTCTCT TCAACATGGC GCTCGGCCCA GTCGCGCTGT CCTTCGTCGG CGCATCCGGC
AAGGACGACT TGAAGCGCAT TTTGGCGCTG AAGAAGGACA GCACCGATTG GCCCGTTTAC
TGGCTCAAGG AAAGGGGGAT CGGCCATGCC GAGACGCTTC TCGCCGATTC ATAG
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| Protein sequence | MVALRSFRHP SPSFADLVPH AGLVANGIVL LKDGSLMAGW YFAGPDSESS TDAERNEVSR
QINTILSRLG SGWMIQVEAV RVPTTDYPAR QDCHFPDPVT RAIDDERRAR FEAERGHFES
RHAIILTWRP PERRRAGLAR YIYSDVESRS ASYADTAIET FQNAIREIEQ YLASVLSIQR
METREVDERD GTRVARYDEL FQFIRFCITG ENHPVRLPDI PMYLDWLATA ELQHGLSPMV
ENRFLGVVAI DGFPAESWPG ILNSLDLMPL TYRWSSRFMF LDDQDARQKL ERTRKKWQQK
VRPFIDQLFQ TQSRSIDQDA AAMVAETEDA IAEASSQLVA YGYYTPVIVL FDDNSTRLQE
KTEAVRRLIQ AEGFGARIET LNATEAFLGS LPGNWYANIR EPLINTRNLA DLIPLNAVWS
GSPTAPCPFY PPNSPPLMQV ASGSTPFRMN LHVDDVGHTL VFGPTGSGKS TLLALIAAQF
RRYAGAQIFA FDKGRSMMPL TLAAGGDHYE IGGDDADGSA ALAFCPLSDL STDTDRAWAS
EWIETLVAVQ GVTITPDHRN AISRQIGLMA EARGRSLSDF VSGVQMREIK DALHHYTVDG
PMGQLLDAES DGLELGSFQT FEIEQLMNMG ERNLVPVLTY LFRRIEKRLT GAPSLIILDE
AWLMLGHPVF RDKIREWLKV LRKANCAVLL ATQSISDAER SGIIDVLKES CPTKICLPNG
AAREPGTRKF YERIGFNDRQ IEIVATAVPK REYYVASPEG RRLFNMALGP VALSFVGASG
KDDLKRILAL KKDSTDWPVY WLKERGIGHA ETLLADS
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