| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4541 |
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| Symbol | |
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| ID | 4025309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | + |
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| Start bp | 3442 |
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| End bp | 3975 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637965043 |
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| Product | conjugal transfer pilin processing protease TraF |
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| Protein accession | YP_571951 |
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| Protein GI | 92109665 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.708935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACGCC AGCGCTCTCT TCTGGTCGTA ATTGCGACCG GCGCCGGCGC CGTGCTTTGC
CTTGCCCTCA CTGGCTGGTG CGCCGACCTG CGCATCAACA TGACGCCGAG CTATCCGCGC
GGCCTGTGGC GGATAGAGGC GCTCGATCGG CCGGCCGACG TCGGCGACCG CATCTTCATC
TGTCCGCCCG ACACGGCTGT GTTCGAACGC GCGTTCAAGC GCGGATATAT CAGACGCGGG
CTGTGCGCCG GCGGCTTGAG CCCGCTCATC AAGACCGTTG CCGCAATCGG CGGACAGCAG
ATCGATGTCG CGGCGCGCGT GTCGATCGAC GGCCGCGTGC TCGGTCATTC CAACGTCAGG
CGCATGGATG CCGCCGGCAG GCCACTCTTG CCGTTCGCGG GCGGCGTCAT TCCCGCCGGC
GCACTTTTTC TCCACTCCGA TTTTGCAGGC TCCTATGACT CCCGCTACTT CGGCCCGATC
CCGGCATCGG GCATCCTTGG CCTCGCCCGG CCCGTTCTCA CCTTCGACAG GTAG
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| Protein sequence | MRRQRSLLVV IATGAGAVLC LALTGWCADL RINMTPSYPR GLWRIEALDR PADVGDRIFI
CPPDTAVFER AFKRGYIRRG LCAGGLSPLI KTVAAIGGQQ IDVAARVSID GRVLGHSNVR
RMDAAGRPLL PFAGGVIPAG ALFLHSDFAG SYDSRYFGPI PASGILGLAR PVLTFDR
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