Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_3407 |
Symbol | |
ID | 4033230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 3750696 |
End bp | 3753194 |
Gene Length | 2499 bp |
Protein Length | 832 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637971818 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_578597 |
Protein GI | 92118868 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.121329 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGACAA TCCGCGCGGC AATTTTCTTC ATCGCCTTTT TATCATGGAT GCCGTTGCAC GCCGCGACGC CTGCACCCGG TAATGCCGGG AGTGCCAAAC CGGCAAGCCC GGCTGCCGCA CCTGCGGCGG CCGCGCCGGC TGAAGATCTG CCGTCGGTTC CGGCGCCGCA GTTTCCTCAA GCACAGTCGA AACTCGACGG CTGGAAGCAG ACGCTCGATC AGGTCGAGTC GGCGCTGCGC GCCCGCGCCA TCGACGATGT CATTTTGAAC GATCTCCGGG ATCGGGCCGC AGCGGCGCAG AGCCAAGCGC GCGAGCTGAT ATCGGGAATG ACGCCTCCGC TCGAAGCGGC GACCGCGCGG GCTGCCGAAC TCGCGCCAAG TCCCGAAGCG ACCGCTCCGC CGCCGGACGA CGTGAAGCTC GAGCGCGCCA AACTGGTGGC TGAAGTTGCC GCCCGCCAGG GCATCGTTCA GCAGGCCAAG CTCATCAACG TGCGGGCCCA GCAAACAATC GACGCGATCT CCGATCGGCG GCGCGCGATC TTCAACGATT CCGTGCTGCA ACGCTCTCCA AGCCTGGTCA GTCCCGCTTT CTGGATCACG GCCGCATCCG CCGTGCCGAT TGCCGCCGGC CACCTGGTCG AGCTCCTCTC CAAGTGGGGG CGGGTGCTGG CATCACAACC GCTTCGCGCC GCCTCCGGCT TCGTTATCGC AGCCATCGTG GTGCTCGGCT TCTTCCTGTC ACCGGGCCGG CGCTGGTGGT CGCGCTGGAC AAAACGCGAC CCCGAGATTG CCAATCCCAG CCCGCTGCGG AAGACCGGCT CCGCCGCCGT CATCGTCCTT GCGGACACCG CGCTCACGGC CGTCGCGCTG CTCGTGCTCT ACCAGGCGCT CATAATGCTC GGGGTTCTAC CCGACGACGT GAGCCCCATC ATTCGGGCCT TGTTCCTGGG CATCACCTTC GGCTTCTTCT TTGTCCGCCT GACCATTGCG GTCCTCGCGC CCAGTCGGCC GACGTGGCGT TTGATCGAAC TGGACAATGC TGCGGCCGAC GGCATGATCT CCTTCTCGGT CCTGCTCGCC ATAATCATCG CGGTCGGCGT GGTTGTGGAC GCCACAAACC TCGCGATCGG GGCGCCCGTC GAACTTTCGA TTGCAAGTCA GGGCATCGTT GCGGTCGTGA AGGCGCTGCT TTATATGGGC GCGCTGCGCG TTGCGGCCGC CACTGAAGCC GACGACGAAA CCCCCGCTGC TTCCTCCGCG AAAAAGTCCG CGTGGCGCCT GCTGATTCCG GTTGGCTGGG TGATGGCTAC GGCCGCCGTT CTCGCGCCGC TCGGGGGATA CGTCGCGTTT GCCCGGTTTG TTACGATTGA AATGGGCGTG GTGATCACCG CGCTTATGAG CTTCGTGCTG CTGAGCCGGT TCGCCGCGGT TCTCATCAAT ACGACATTTG CCTTTCATGG CGCGATCGGC CGCTTTCTGC GGCAAACCGC GGGCCTCGGG AGCGGCGCGG TCCGGCAGAT CGCCGCGGTG CTCGGCGGCC TCATCCAACT GTCCCTGATA GGGCTGACGG CCTTCGTCGT GCTCACGACC TGGGGGATCC GTTCCGACGA CGTCGTCACG TCGATGTCTT CGGCATTCTT CAGCTTTCAG ATCGGCAATA TCACCATTTC GCCGTCCGCG ATTCTCGGCG CGGTTGCGGT TCTCATCATC GGGGTCATGG CCACGCGCGC GCTCAAGCGC TGGCTCGAGG AGCGTTTCCT GCCGGAAACC AATCTCGATG TCGGCGTTCG CAGTTCGATC GGCACCGGCG CGGGTTATGC GGGCGTCATT CTCGCCACCC TGATCGCGCT GTCGTATGTC GGTCTCAACC TGCAAAACGT CGCCATCGTC GCCGGTGCGC TGTCGGTCGG CATCGGCTTC GGACTGCAAT CCATCATCAA CAACTTCGTT TCCGGTCTGA TTCTCCTCGT GGAGCGCCCG ATCAAGGTCG GGGATCGCAT CGAGGTCGGC AGCCGCATGG GCGTCGTCAA ACGCATCAAC GTGCGCGCCA CCGAGATCGC GACCTACGAC AACCTCTCGG TGATCGTGCC AAACGCGGAA CTGATCAGCG GACAGGTCGT CAACTGGATG CATGGCAGCT ATTCGGCCCG TCTGTCGGTG ACGGTCGGCA CCTCCGGTGA TGCAGACCCG GACAAGGTCA TCGAAATCCT GCTCGATATC GTCGCGCACC ATCCACGCGC GCTGAAGTCA CCCGAGCCGT TTGCCATTCT CGGCAATTTC GCCGCCGACG GGCTGGAGTT CATGGTGTTC TTTCACGTCG CGCATATCGG CATCGACGCC GGAGCCGCCA ATGAGGTCAG GCTCGAGATC CTCAAACGCT TCCGCAAGGA GGGAATCGAC CTTCCAAACC CTCAACGGGA CCTGCATGTA CGGGATCTCG ATCGCATCGA AGCTCTGGTG CGCGAACTGG TCCGCCCCGA ACGCTCCAGC CCATCATAG
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Protein sequence | MKTIRAAIFF IAFLSWMPLH AATPAPGNAG SAKPASPAAA PAAAAPAEDL PSVPAPQFPQ AQSKLDGWKQ TLDQVESALR ARAIDDVILN DLRDRAAAAQ SQARELISGM TPPLEAATAR AAELAPSPEA TAPPPDDVKL ERAKLVAEVA ARQGIVQQAK LINVRAQQTI DAISDRRRAI FNDSVLQRSP SLVSPAFWIT AASAVPIAAG HLVELLSKWG RVLASQPLRA ASGFVIAAIV VLGFFLSPGR RWWSRWTKRD PEIANPSPLR KTGSAAVIVL ADTALTAVAL LVLYQALIML GVLPDDVSPI IRALFLGITF GFFFVRLTIA VLAPSRPTWR LIELDNAAAD GMISFSVLLA IIIAVGVVVD ATNLAIGAPV ELSIASQGIV AVVKALLYMG ALRVAAATEA DDETPAASSA KKSAWRLLIP VGWVMATAAV LAPLGGYVAF ARFVTIEMGV VITALMSFVL LSRFAAVLIN TTFAFHGAIG RFLRQTAGLG SGAVRQIAAV LGGLIQLSLI GLTAFVVLTT WGIRSDDVVT SMSSAFFSFQ IGNITISPSA ILGAVAVLII GVMATRALKR WLEERFLPET NLDVGVRSSI GTGAGYAGVI LATLIALSYV GLNLQNVAIV AGALSVGIGF GLQSIINNFV SGLILLVERP IKVGDRIEVG SRMGVVKRIN VRATEIATYD NLSVIVPNAE LISGQVVNWM HGSYSARLSV TVGTSGDADP DKVIEILLDI VAHHPRALKS PEPFAILGNF AADGLEFMVF FHVAHIGIDA GAANEVRLEI LKRFRKEGID LPNPQRDLHV RDLDRIEALV RELVRPERSS PS
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